Published March 11, 2022 | Version v1

MD simulation of POPC bilayer with OPLS3e force field, 50 mM CaCl2 part 2

Authors/Creators

Description

MD simulation of POPC bilayer with OPLS3e force field, 50 mM CaCl2 part 2 (500-1000ns)

Dataset contains trajectories (_trj) for the last 500ns of the 1000ns trajectory, topology (-out.cms), and other files.

For the ease of the upload, trajectory files (_trj) are divided to 100ns pieces and tarred (named desmond_md_cacl50_x-xns.tar.gz)

System: POPC bilayer in water

Number of lipids: 200 (100/leaflet)

Number of waters: 8880

Salt: CaCl2

Concentration: 50 mM

Number of cations: 8

Simulation time: 1000 ns (in this dataset 500-1000ns)

Simulation engine: Desmond 2019-4

Temperature: 300 K

Related dataset: MD simulation of POPC bilayer with OPLS3e force field, 50 mM CaCl2 part 1

Files

Files (29.7 GB)

Name Size
md5:026e6afa39e33f6e16812eb2f37e9e8d
8.1 kB Download
md5:f5543f5f1d68c5a562a138f8e6afaae3
15.5 MB Download
md5:99d0508175cc4d97dc75af327fabc188
23.3 MB Download
md5:df3556fc490e9b205d7fb0d0230e33bc
68.3 MB Download
md5:92140f7d665152a0938d3cf80bd388dd
5.9 GB Download
md5:d55866e177bfeac963d8d111ad21fbc9
5.9 GB Download
md5:1f8b1464ff89be445b18a292d58ee40f
5.9 GB Download
md5:f9783ac6fab48161bab7a0fd91e8f6fd
5.9 GB Download
md5:c8d8ab24cf240f4da486de0b1c53835d
15.5 MB Download
md5:c8d6b933064c2581e008a072497c8bd6
5.9 GB Download

Additional details

Related works

Compiles
Preprint: 10.26434/chemrxiv-2022-m89bg (DOI)