Planned intervention: On Wednesday April 3rd 05:30 UTC Zenodo will be unavailable for up to 2-10 minutes to perform a storage cluster upgrade.

There is a newer version of the record available.

Published February 15, 2022 | Version 1.0
Other Open

Human Lung Cell Atlas reference model, embedding and extended models

  • 1. Helmholtz Center Munich

Description

Reference model, and reference embedding for mapping of new data to the Human Lung Cell Atlas (HLCA) core. For information on how the reference model was built, see the HLCA preprint (doi: tbd).

The reference model serves as a basis for the mapping of new data to the HLCA using scArches (see Lotfollahi et al., https://doi.org/10.1038/s41587-021-01001-7). 

scArches surgery adapters and embeddings are included for all dataset part of the HLCA extension.

For more information, see the HLCA pre-print, the HLCA GitHub (link: tbd), and these platforms for automated mapping: (links: tbd). 

Files

HLCA_extended_models_and_embs.zip

Files (603.5 MB)

Name Size Download all
md5:4378d7a38a5ddf261aca5e3633e58b71
217.8 MB Download
md5:bfb2c8d9c405bed1be610e8c2f904346
380.4 MB Preview Download
md5:508501e0665837aa3c68ab523203da0f
5.3 MB Preview Download