Coronavirus Disease Research Community - COVID-19
Published March 8, 2022 | Version Version 1
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Denaturing and dNTPs reagents improve SARS-CoV-2 detection via single and multiplex RT-qPCR

Authors/Creators

  • 1. Large-Scale and Advanced Computing Research Group – CAGE, Industrial University of Santander, Cl. 9 # Cra 27, 680006, Bucaramanga, Santander, Colombia
  • 2. Research group on Demography, Public Health and Health Systems – GUINDESS, Industrial University of Santander, Cl. 9 # Cra 27, 680006, Bucaramanga, Santander, Colombia
  • 3. Large-Scale and Advanced Computing Research Group – CAGE, High Performance and Scientific Computing Center - UIS, Industrial University of Santander, Cl. 9 # Cra 27, 680006, Bucaramanga, Santander, Colombia

Contributors

  • 1. Large-Scale and Advanced Computing Research Group – CAGE, Industrial University of Santander, Cl. 9 # Cra 27, 680006, Bucaramanga, Santander, Colombia
  • 2. Research group on Demography, Public Health and Health Systems – GUINDESS, Industrial University of Santander, Cl. 9 # Cra 27, 680006, Bucaramanga, Santander, Colombia
  • 3. Large-Scale and Advanced Computing Research Group – CAGE, High Performance and Scientific Computing Center - UIS, Industrial University of Santander, Cl. 9 # Cra 27, 680006, Bucaramanga, Santander, Colombia

Description

The datas correspond to article entitled: "Denaturing and dNTPs reagents improve SARS-CoV-2 detection via single and multiplex RT-qPCR". 

The file entitle GISAID have the fasta formats for 107259 genomes from the SARS-CoV-2 GISAID database from January to December 2020. Three documents in plane tex correspond:
sequences.fasta contain the original data.
sequences_clean.fasta. Corresponds to genomes sequences without nucleotides undeterminateds indicates with "N" in previous document.
alignment_clean.fasta. Contain the genomes sequences cleaned alingment.  

The file entitle GenBank  have the data set from 19317  genomes from the SARS-CoV-2 GenBank database  from January to October 2020 and the documets have the prrevious order.

Notes

These data are also associated with the national project entitled: "Contribution to the diagnostic protocol of the Coronavirus SARS-CoV-2 and the Influenza A H1N1 Virus by real-time RT-PCR in one step authorized by the World Health Organization with the inclusion of marker genes required for viral infection and their validation by next-generation genomic sequencing with nucleotide concentration technology" financed by the Vice-Rectory of Research and Extension of Industrial University of Santander [project No. 76900] and the Ministry of Science, Technology and Innovation (MinCiencias) of Colombia [No. 1015-2020 - Mincinciaton].

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