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Dataset Open Access

Mar2022 reference datasets for Mitohelper

Lim,Jean; Thompson,Luke

Reference datasets (Mar 2022 update) for Mitohelper (https://github.com/aomlomics/mitohelper)

Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline.

I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information:

  • mitofish.all.Mar2022.tsv (738,038 records)
  • mitofish.12S.Mar2022.tsv (40,019 records)
  • mitofish.COI.Mar2022.tsv (257,414 records)

II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets:

  • 12S-seqs-derep-uniq.qza 
  • 12S-tax-derep-uniq.qza 
  • 12S-16S-18S-seqs.qza 
  • 12S-16S-18S-tax.qza 

If you use Mitohelper, please cite:
Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10.  https://doi.org/10.1002/edn3.187

Files (2.1 GB)
Name Size
12S-16S-18S-seqs.qza
md5:39e899113d4a9694e95a030788b35036
106.4 MB Download
12S-16S-18S-tax.qza
md5:c2f0cb49e86d119f434bf9464552eb86
7.3 MB Download
12S-seqs-derep-uniq.qza
md5:44dbb2459a6a2d7675cebe1bfee90f8b
9.3 MB Download
12S-tax-derep-uniq.qza
md5:5b1d297c3ee77d044d38726d52c8ca80
505.3 kB Download
mitofish.12S.Mar2022.tsv
md5:1556d66de96ef27dae38091b2355ca90
211.9 MB Download
mitofish.all.Mar2022.tsv
md5:ef3de74698f5f8aea8baba6188cc4e4c
1.3 GB Download
mitofish.COI.Mar2022.tsv
md5:307b39e42eae789eb06eb9e33254ff8b
492.6 MB Download
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