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Published January 3, 2022 | Version Mar2022
Dataset Open

Mar2022 reference datasets for Mitohelper

  • 1. University of Miami
  • 2. Mississippi State University

Description

Reference datasets (Mar 2022 update) for Mitohelper (https://github.com/aomlomics/mitohelper)

Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline.

I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information:

  • mitofish.all.Mar2022.tsv (738,038 records)
  • mitofish.12S.Mar2022.tsv (40,019 records)
  • mitofish.COI.Mar2022.tsv (257,414 records)

II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets:

  • 12S-seqs-derep-uniq.qza 
  • 12S-tax-derep-uniq.qza 
  • 12S-16S-18S-seqs.qza 
  • 12S-16S-18S-tax.qza 

If you use Mitohelper, please cite:
Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10.  https://doi.org/10.1002/edn3.187

Files

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