Panmixia and active colonisation of the invasive palm Trachycarpus fortunei (Arecaceae) in Southern Switzerland and Northern Italy as inferred by microsatellites and SNP markers
Authors/Creators
- 1. Laboratoire de Phylogénie et Génétique moléculaires, Conservatoire et Jardin botaniques de la Ville de Genève, Insubric Ecosystem Research Group, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, a Ramél 18, 6593, Cadenazzo, Switzerland
- 2. Conservatoire et Jardin botaniques de la Ville de Genève
- 3. Museo Cantonale di Storia Naturale del Canton Ticino, Viale C. Cattaneo 4, 6900 Lugano, Switzerland,
- 4. DIADE, Université Montpellier, CIRAD, IRD, 911 Avenue Agropolis, BP 64501, 34394 Montpellier, Cedex 5, France
- 5. Laboratoire de Phylogénie et Génétique moléculaires, Conservatoire et Jardin botaniques de la Ville de Genève, Chemin de l'Impératrice 1, 1292 Chambésy, Genève, Switzerland,
Description
Dataset for the paper named "Panmixia and active colonisation of the invasive palm Trachycarpus fortunei (Arecaceae) in Southern Switzerland and Northern Italy as inferred by microsatellites and SNP markers"
GBS analysis:
- variants.vcf.gz : compressed non filtered VCF file with 208 samples and 73685 markers on 36195 loci
- variants.filt.vcf.gz: Filtered Variant call file (compressed) - Samples with > 50% missing genotypes, and variants with genotype calls in less than 80% of samples are removed; variants with maf < 1% are removed -207 samples and 31312 markers on 19301 loci - 1 samples removed 6CL
Microsatellites:
TFT.fortunei_Microsatellites_FSTATFINAL_Pop.dat
Samples file
-Trachycarpus_Samples_sheet.xlsx : list of samples used (lab extractions)
Files
Files
(109.0 MB)
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