Published March 3, 2022 | Version v1
Dataset Open

Dataset for Aqueous habitats and carbon inputs shape the microscale geography and interaction ranges of soil bacteria

Authors/Creators

  • 1. ETH Zurich, Zürich, 8092, Switzerland; Graz University of Technology, Graz, 8010, Austria
  • 2. ETH Zurich, Zürich, 8092, Switzerland; Desert Research Institute, Reno, NV, USA

Description

This repository hosts data for the paper entitled: "Aqueous habitats and carbon inputs shape the microscale geography and interaction ranges of soil bacteria" by Samuel Bickel and Dani Or.

The following files are provided:

Microcosm experiment:

- Fluorescence microscopy images of the microcosm experiment (*.tif)

- Code used for extracting cell locations from images (image_analysis.py)

Global model estimates from the bacterial interactions heuristic model:

- Maps of estimated cell density and proportion of biomass associated with anoxic cell clusters (*.nc)

 

Files

mugeo_v1.zip

Files (182.6 MB)

Name Size
md5:895bd3e1849bf0d592c38e55491b5249
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Additional details

Related works

Is derived from
Dataset: 10.5281/zenodo.5078258 (DOI)
Dataset: 10.5281/zenodo.6325159 (Handle)

Funding

European Commission
SOILLIFE - The Hidden Frontier: Quantitative Exploration of Physical and Ecological Origins of Microbial Diversity in Soil 320499