Published February 25, 2022
| Version v1
Journal article
Restricted
A new species of Philoria (Anura: Limnodynastidae) from the uplands of the Gondwana Rainforests World Heritage Area of eastern Australia
Authors/Creators
Description
Bertozzi, Terry (2022): A new species of Philoria (Anura: Limnodynastidae) from the uplands of the Gondwana Rainforests World Heritage Area of eastern Australia. Zootaxa 5104 (2): 209-241, DOI: 10.11646/zootaxa.5104.2.3
Files
Restricted
The record is publicly accessible, but files are restricted to users with access.
Linked records
Additional details
Identifiers
- URL
- https://www.checklistbank.org/dataset/20468
- LSID
- urn:lsid:zoobank.org:pub:D61A9AA9-6081-4BFC-AF2D-C1C0D708D9B0
- LSID
- urn:lsid:plazi.org:pub:6D17B52DFF90C547E469FFD81355FFA9
- URL
- http://publication.plazi.org/id/6D17B52DFF90C547E469FFD81355FFA9
References
- Anstis, M. (2013) Tadpoles and Frogs of Australia. New Holland Publishers, Sydney, 831pp.
- Anstis, M., Price, L.C., Roberts, J.D., Catalano, S., Doughty, P., Hines, H.B. & Donnellan, S.C. (2016) Revision of the Australian water holding frog (Cyclorana platycephala, Anura: Hylidae), with a description of a new species and subspecies. Zootaxa, 4126 (1), 451-479. https://doi.org/10.11646/zootaxa.4126.4.1
- Beeman, K. (1998) Digital signal analysis, editing, and synthesis. In: Hopp, S.L., Owren, M.J. & Evans, C.S. (Eds.), Animal acoustic communication Springer, Berlin and Heidelberg, pp. 59-103.
- Bolitho, L.J., Rowley, J.J., Hines, H.B. & Newell, D. (2021) Occupancy modelling reveals a highly restricted and fragmented distribution in a threatened montane frog (Philoria kundagungan) in subtropical Australian rainforests. Australian Journal of Zoology, 67, 231-240. https://doi.org/10.1071/ZO20037
- Bryant, L.M. & Krosch, M.N. (2016) Lines in the land: a review of evidence for eastern Australia's major biogeographical barriers to closed forest taxa. Biological Journal of the Linnean Society, 119, 238-264. https://doi.org/10.1111/bij.12821
- Chifman, J. & Kubatko, L. (2014) Quartet inference from SNP data under the coalescent model. Bioinformatics, 30, 3317- 3324. https://doi.org/10.1093/bioinformatics/btu530
- Dowdy, A. Abbs, D., Bhend, J., Chiew, F., Church, J., Ekstrom, M., Kirono, D., Lenton, A., Lucas, C., McInnes, K., Moise, A., Monselesan, D., Mpelasoka, F., Webb, L. & Whetton, P. (2015) s.n. In: Ekstrom, M. Whetton, P., Gerbing, C., Grose, M., Webb, L. & Risbey, J. (Eds.), East Coast Cluster Report, Climate Change in Australia Projections for Australia's Natural Resource Management Regions: Cluster Reports. CSIRO and Bureau of Meteorology. Available from: https://www.climatechangeinaustralia.gov.au/media/ccia/2.2/cms_page_media/168/EAST_COAST_CLUSTER_REPORT_2021updated.pdf (accessed 8 February 2022) https://www.climatechangeinaustralia.gov.au/en/communication-resources/reports/
- Dowdy, A.J., Ye, H., Pepler, A., Thatcher, M., Osbrough, S L., Evans, J.P., Di Virgilio, G. & McCarthy, N. (2019) Future changes in extreme weather and pyroconvection risk factors for Australian wildfires. Scientific Reports, 9, 10073. https://doi.org/10.1038/s41598-019-46362-x
- Earl, D.A. (2012) Structure harvester: A website and program for visualizing structure output and implementing the Evanno method. Conservation Genetics Resources, 4, 359-361. https://doi.org/10.1007/s12686-011-9548-7
- Evanno, G., Regnaut, S., & Goudet, J. (2005) Detecting the number of clusters of individuals using the software structure: A simulation study. Molecular Ecology, 14, 2611-2620. https://doi.org/10.1111/j.1365-294X.2005.02553.x
- Evans, J.P., Ji, F., Lee, C., Smith, P., Argueso, D. & Fita, L. (2014) Design of a regional climate modelling projection ensemble experiment-NARCliM. Geoscientific Model Development, 7, 621-629.
- Familiar Lopez, M. (2016) Distribution, ecology, disease and physiology of mountain-top endemic frogs in the face of climate change: A study on Philoria sp. PhD Dissertation, Griffith University, Brisbane. Available from: https://research-repository. griffith.edu.au/handle/10072/368164?show=full (accessed 8 February 2022)
- Familiar Lopez, M., Rebollar, E.A., Harris, R.N., Vredenburg, V.T. & Hero, J.-M. (2017) Temporal variation of the skin bacterial community and Batrachochytrium dendrobatidis infection in the terrestrial cryptic frog Philoria loveridgei. Frontiers in Microbiology, 8, 2535. https://doi.org/10.3389/fmicb.2017.02535
- Georges, A., Gruber, B., Pauly, G.B., White, D., Adams, M., Young, M.J., Kilian, A., Zhang, X., Shaffer, H.B. & Unmack, P.J. (2018) Genome wide SNP markers breathe new life into phylogeography and species delimitation for the problematic short-necked turtles (Chelidae: Emydura) of eastern Australia. Molecular Ecology, 27, 5195-5213. https://doi.org/10.1111/mec.14925
- Gruber, B., Unmack, P.J., Berry, O.F. & Georges, A. (2018) dartR: An R package to facilitate analysis of SNP data generated from reduced representation genome sequencing. Molecular Ecology Resources, 18, 691-699. https://doi.org/10.1111/1755-0998.12745
- Heard, G., Bolitho, L., Newell, D., Hines, H., McCall, H., Smith, J. & Scheele, B. (2021) Post-fire impact assessment for priority frogs: northern Philoria. NESP Threatened Species Recovery Hub Project 8.1.3 report, Brisbane. Available from; https://www.nespthreatenedspecies.edu.au/media/srzerc1y/8-1-3-post-fire-impact-assessment-for-priority-frogs_v6.pdf (accessed 8 February 2022)
- Hoang, D.T., Chernomor, O., von Haeseler, A., Minh, B.Q. & Vinh, L.S. (2018) UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology Evolution, 35, 518-522. https://doi.org/10.1093/molbev/msx281
- Hutley, L.B., Doley, D. & Yates, D.J. & Boonsaner, A. (1997) Water balance of an Australian subtropical rainforest at altitude: the ecological and physiological significance of intercepted cloud and fog. Australian Journal of Botany, 45, 311-329. https://doi.org/10.1071/BT96014
- Ingram, G.J. & Corben, C.J. (1975) A new species of Kyarranus (Anura: Leptodactylidae) from Queensland, Australia. Memoirs of the Queensland Museum, 17, 335-339.
- IUCN (2012) Guidelines for application of IUCN Red List criteria at regional and national levels. Version 4.0. Available from: https://www.iucn.org/content/guidelines-application-iucn-red-list-criteria-regional-and-national-levels-version-40 (acessed 8 February 2022)
- Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K.F., von Haeseler A. & Jermiin, L.S. (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods, 14, 587-589. https://doi.org/10.1038/nmeth.4285
- Katoh, K., Kuma, K., Toh, H. & Miyata, T. (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research, 33, 511-518. https://doi.org/10.1093/nar/gki198
- Kohler, J., Jansen, M., Rodriguez, A., Kok, P., Toledo, L., Emmrich, M., Glaw, F., Haddad, C., Rodel, M. & Vences, M. (2017) The use of bioacoustics in anuran taxonomy: theory, terminology, methods and recommendations for best practice. Zootaxa, 4251 (1), 1-124. https://doi.org/10.11646/zootaxa.4251.1.1
- Kopelman, N.M., Mayzel, J., Jakobsson, M., Rosenberg, N.A. & Mayrose, I. (2015) CLUMPAK: a program for identifying clustering modes and packaging population structure inferences across K. Molecular Ecology Resources, 15, 1179-1191. https://doi.org/10.1111/1755-0998.12387
- Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Meintjes, P. & Drummond, A. (2012) Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics Applications Note, 28, 1647-164. https://doi.org/10.1093/bioinformatics/bts199
- Keith, D.A., Mahony, M., Hines, H., Elith, J., Regan, T.J., Baumgartner, J.B., Hunter, D., Heard, G.W., Mitchell, N.J., Parris, K.M., Penman, T., Scheele, B., Simpson, C.C., Tingley, R., Tracy, C.R., West, M. & Akcakaya, H.R. (2014) Detecting extinction risk from climate change by IUCN Red List criteria. Conservation Biology, 28, 810-819. https://doi.org/10.1111/cobi.12234
- Kilian, A., Wenzl, P., Huttner, E., Carling, J., Xia, L., Blois, H., Caig, V., Heller-Uszynska, K., Jaccoud, D., Hopper, C., Aschenbrenner-Kilian, M., Evers, M., Peng, K., Cayla, C., Hok, P. & Uszynski, G. (2012) Diversity arrays technology: A generic genome profiling technology on open platforms. Methods in Molecular Biology, 888, 67-89. https://doi.org/10.1007/978-1-61779-870-2_5
- Knesel, K.M., Cohen, B.E., Vasconcelos, P.M. & Thiede, D.S. (2008) Rapid change in drift of the Australian plate records collision with Ontong Java plateau. Nature, 454, 754-758. https://doi.org/10.1038/nature07138
- Knowles, R., Mahony, M., Armstrong, J. & Donnellan, S.C. (2004) Systematics of sphagnum frogs of the genus Philoria (Anura: Myobatrachidae) in eastern Australia. Records of the Australian Museum, 56, 57-74.
- Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology Evolution, 33, 1870-1874. https://doi.org/10.1093/molbev/msw054
- Laidlaw, M.J., McDonald, W.J.F., Hunter, R.J., Putland, D.A. & Kitching, R.L. (2011) The potential impacts of climate change on Australian subtropical rainforest. Australian Journal of Botany, 59, 440-449. https://doi.org/10.1071/BT10319
- Lleonart, J., Salat, J. & Torres, G.J. (2000) Removing allometric effects of body size in morphological analysis. Journal of Theoretical Biology, 205, 85-93. https://doi.org/10.1006/jtbi.2000.2043
- Leache, A.D., Banbury, B.L., Felsenstein, J., de Oca, A.N. & Stamatakis A. (2015) Short tree, long tree, right tree, wrong tree: new acquisition bias corrections for inferring SNP phylogenies. Systematic Biology, 64, 1032-1047. https://doi.org/10.1093/sysbio/syv053
- Mahony, M.J., Moses, B., Mahony, S., Lemckert, F. & Donnellan, S.C. (2020) A new species of frog in the Litoria ewingii species group (Anura: Pelodryadidae) from south-eastern Australia. Zootaxa, 4858, 201-230. https://doi.org/10.11646/zootaxa.4858.2.3
- Mahony, M.J., Ross, D., Newell, D., Willacy, R., Hero, J-M., Familiar-Lopez, & Lollback, G. (2013) Monitoring the effects of climate change: A survey and report on the status of endemic high altitude frogs in the Gondwana Rainforests of Australia World Heritage Area. Grant report Gondwana WHA (DECCW-720-2010). Unpublished Report for the NSW Office of Environment and Heritge, Sydney. pp. 1-97.
- Moritz, C. (2002) Strategies to protect biological diversity and the evolutionary processes that sustain it. Systematic Biology, 51, 238-254. https://doi.org/10.1080/10635150252899752
- Narsey, S., Laidlaw, M., Colman, R., Pearce, K., Hopkins, M. & Dowdy, A (2020) Impact of climate change on cloud forests in the Gondwana Rainforests of Australia World Heritage Area. NESP Earth Systems and Climate Change Hub. Available from; https://nespclimate.com.au/wp-content/uploads/2020/09/Gondwana-LCL-CS-TR-final.pdf (accessed 8 February 2022)
- Newell, D.A (2018) An update on frog declines from the forests of subtropical eastern Australia. In: Heatwole, H. & Rowley, J. (Eds.), Status of Conservation and Decline of Amphibians. CSIRO Publishing, Melbourne, pp. 29-37.
- Nguyen, L.-T., Schmidt, H.A., von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Molecular Biology Evolution, 32, 268-274. https://doi.org/10.1093/molbev/msu300
- Parker, H.W. (1940) The Australasian frogs of the family Leptodactylidae. Novitates Zoologicae, 42, 1-106.
- Pritchard, J.K., Stephens, M. & Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959. https://doi.org/10.1534/genetics.116.195164
- Queensland Herbarium (2021) Regional Ecosystem Description Database (REDD). Version 12. March 2021. Department of Environment and Science, Brisbane. https://apps.des.qld.gov.au/regional-ecosystems/ 21 Feb 2022
- Rambaut, A., Drummond, A.J., Xie, D., Baele, G. & Suchard, M.A. (2018) Posterior summarisation in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67, 901-904. https://doi.org/10.1093/sysbio/syy032
- Renner, S.S. (2016) Return to Linnaeus's focus on diagnosis, not description: the use of DNA characters in the formal naming of species. Systematic Biology, 65, 1085-1095. https://doi.org/10.1093/sysbio/syw032
- Reside, A.E., VanDerWal, J., Phillips, B., Shoo, L.P., Rosauer, D.F., Anderson, B.A., Welbergen, J., Moritz, C., Ferrier, S., Harwood, T.D., Williams, K.J., Mackey, B., Hugh, S. & Williams, S.E. (2013) Climate change refugia for terrestrial biodiversity: Defining areas that promote species persistence and ecosystem resilience in the face of global climate change. National Climate Change Adaptation Research Facility, Gold Coast, 216 pp.
- Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MRBAYES 3.2: Efficient Bayesian phylogenetic inference and model selection across a large model space. Systematic Biology, 61, 539-542. https://doi.org/10.1093/sysbio/sys029
- Sauer, J., Domisch, S., Nowak, C. & Haase, P. (2011) Low mountain ranges: summit traps for montane freshwater species under climate change. Biodiversity and Conservation, 20, 3133-3146. https://doi.org/10.1007/s10531-011-0140-y
- Shea, G. (2005) The type location of the sphagnum frog Philoria loveridgei (Anura: Myobatrachidae). Memoirs of the Queensland Museum, 51, 524.
- Spencer, B. (1901) Two new species of frogs from Victoria. Proceedings of the Royal Society of Victoria, 13, 175-178.
- Swofford, D.L. (2003) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
- Thorpe, R.S. (1976) Biometric analysis of geographic variation and racial affinities. Biological Reviews, 51, 407-452.
- Trifinopoulos, J., Nguyen, L.-T., von Haeseler, A. & Minh, B.Q. (2016) W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research, 44 (W1), W232-W235. https://doi.org/10.1093/nar/gkw256
- Willacy, R.J., Mahony, M. & Newell, D.A. (2015) If a frog calls in the forest: Bioacoustic monitoring reveals the breeding phenology of the endangered Richmond Range mountain frog (Philoria richmondensis). Austral Ecology, 40, 625-633. https://doi.org/10.1111/aec.12228