Published February 23, 2022 | Version 1

(Fastq Files) Amplicon sequencing of ama1 and mdr1 to track within-host P. falciparum diversity in Kilifi, KENYA

  • 1. KEMRI-Wellcome Trust Research Programme
  • 2. KEMRI-Wellcome Trust Research Programme & Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom
  • 3. London School of Hygiene and Tropical Medicine

Description

These data were generated from amplicon sequencing of Plasmodium falciparum ama1 and mdr1 genes in samples collected from Kilifi, at the coast of Kenya.

The two papers that reference these data will soon be included here:

  1.  The Journal of Infectious Diseases - https://doi.org/10.1093/infdis/jiac144
  2. Wellcome Open Research - https://wellcomeopenresearch.org/articles/7-95

Two objectives were explored:

  1. To determine temporal changes in the genetic diversity of malaria parasites in asymptomatic and febrile infections.
  2. To track within-host parasite diversity, throughout treatment in a clinical drug trial.

Files

00_readme.txt

Files (21.4 GB)

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Additional details

Funding

Wellcome Trust
A novel strategy for understanding the functional impact of variation in Plasmodium falciparum merozoite vaccine candidates. 107568