Published April 1, 2017
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Planococcus versutus sp. nov., isolated from soil
Description
See-Too, Wah-Seng, Ee, Robson, Madhaiyan, Munusamy, Kwon, Soon-Wo, Tan, Jia Yi, Lim, Yan Lue, Convey, Peter, Pearce, David A., Yin, Wai Fong, Chan, Kok-Gan (2017): Planococcus versutus sp. nov., isolated from soil. International Journal of Systematic and Evolutionary Microbiology 67 (4): 944-950, DOI: 10.1099/ijsem.0.001721, URL: http://dx.doi.org/10.1099/ijsem.0.001721
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Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:FFC7FFC0FF953356102EFA79BB406D3F
- URL
- http://publication.plazi.org/id/FFC7FFC0FF953356102EFA79BB406D3F
Related works
- Has part
- Taxonomic treatment: 10.5281/zenodo.6314458 (DOI)
- Taxonomic treatment: http://treatment.plazi.org/id/03FE87B8FF9033501057FCD1BA3B6FF8 (URL)
- Figure: 10.5281/zenodo.6223686 (DOI)
- Figure: 10.5281/zenodo.6223690 (DOI)
- Is source of
- Dataset: http://www.gbif.org/dataset/e6191eb2-2927-4a79-b46f-1ebb9d4bc2df (URL)
References
- 1. Migula W. Uber ein neues System der Bakterien. Arb Bakteriol Inst Karlsruhe 1894;1:235-238.
- 2. Yoon J-H, Kang S-S, Lee K-C, Lee ES, Kho YH et al. Planomicrobium koreense gen. nov., sp. nov., a bacterium isolated from the Korean traditional fermented seafood jeotgal, and transfer of Planococcus okeanokoites (Nakagawa et al. 1996) and Planococcus mcmeekinii (Junge et al. 1998) to the genus Planomicrobium. Int J Syst Evol Microbiol 2001;51:1511-1520.
- 3. Kim JH, Kang HJ, Yu BJ, Kim SC, Lee PC. Planococcus faecalis sp. nov., a carotenoid-producing species isolated from stools of Antarctic penguins. Int J Syst Evol Microbiol 2015;65:3373-3378.
- 4. Margolles A, Gueimonde M, S“anchez B. Genome sequence of the Antarctic psychrophile bacterium Planococcus antarcticus DSM 14505. J Bacteriol 2012;194:4465.
- 5. Pearson MD, Noller HF. The draft genome of Planococcus donghaensis MPA1U2 reveals nonsporulation pathways controlled by a conserved Spo0A regulon. J Bacteriol 2011;193:6106.
- 6. Reddy G, Prakash J, Vairamani M, Prabhakar S, Matsumoto G et al. Planococcus antarcticus and Planococcus psychrophilus spp. nov. isolated from cyanobacterial mat samples collected from ponds in Antarctica. Extremophiles 2002;6:253-261.
- 7. Mykytczuk NC, Foote SJ, Omelon CR, Southam G, Greer CW et al. Bacterial growth at -15 O C; molecular insights from the permafrost bacterium Planococcus halocryophilus Or1. Isme J 2013;7: 1211-1226.
- 8. See-Too WS, Tan JY, Ee R, Lim YL, Convey P et al. De novo assembly of complete genome sequence of Planococcus kocurii ATCC 43650T, a potential plant growth promoting bacterium. Mar Genomics 2016;28:33-35.
- 9. Huang X, Lin J, Ye X, Wang G. Molecular characterization of a thermophilic and salt- and alkaline-tolerant xylanase from Planococcus sp. SL4, a strain isolated from the sediment of a soda lake. J Microbiol Biotechnol 2015;25:662-671.
- 10. Unverferth CA, Santisteban IC, Setterdahl AT. Draft genome sequence of the novel black-pigmented Planococcus sp. strain CAU13. Genome Announc 2014;2:e01160-14.
- 11. Chan KG, Yin WF, Sam CK, Koh CL. A novel medium for the isolatio n of N -acylhomoserine lactone-degrading bacteria. J Ind Microbiol Biotechnol 2009;36:247-251.
- 12. Vali H, Weiss B, Li YL, Sears SK, Kim SS et al. Formation of tabular single-domain magnetite induced by Geobacter metallireducens GS-15. Proc Natl Acad Sci USA 2004;101:16121-16126.
- 13. Smibert RM, Krieg NR. Phenotypic characterization. In: Gerhardt P (editor). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology; 1994. pp. 607-654.
- 14. Lane DJ. 16S/23S rRNA sequencing. In: Stackebrandt E and Goodfellow M (editors). Nucleic Acid Techniques in Bacterial Systematics. Chichester: Wiley; 1991. pp. 115-175.
- 15. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012;62:716-721.
- 16. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013;30:2725-2729.
- 17. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004;32:1792-1797.
- 18. Dai X, Wang Y-N, Wang B-J, Liu S-J, Zhou Y-G. Planomicrobium chinense sp. nov., isolated from coastal sediment, and transfer of Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicrobium as Planomicrobium psychrophilum comb. nov. and Planomicrobium alkanoclasticum comb. nov. Int J Syst Evol Microbiol 2005;55:699-702.
- 19. Richter M, Rossello-Mora R, Glockner FO, Peplies J. JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics 2015;32: 929-931.
- 20. Lee I, Kim YO, Chun J, Park S-C. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2016;66:1100-1103.
- 21. Richter M, Rossello-Mora R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009;106:19126-19131.
- 22. Minnikin DE, O 'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984;2: 233-241.
- 23. Embley TM, Wait R. Structural lipids of eubacteria. In: Goodfellow M and O' Donnell AG (editors). Chemical Methods in Prokaryotic Systematics. Chichester: Wiley; 1994. pp. 121-161.
- 24. Kaur I, Das AP, Acharya M, Klenk HP, Sree A et al. Planococcus plakortidis sp. nov., isolated from the marine sponge Plakortis simplex (Schulze). Int J Syst Evol Microbiol 2012;62:883-889.
- 25. Pandey KK, Mayilraj S, Chakrabarti T. Pseudomonas indica sp. nov., a novel butane-utilizing species. Int J Syst Evol Microbiol 2002;52:1559-1567.