Published February 21, 2022 | Version v1.0
Dataset Open

Scanning the horizon for invasive plant threats using a data-driven approach

Authors/Creators

  • 1. University of Florida
  • 2. University of Florida, Czech Academy of Sciences
  • 3. Florida Department of Agriculture and Consumer Services
  • 4. Environmental Defense Fund, University of Florida
  • 5. Florida Fish and Wildlife Conservation Commission
  • 6. U.S. Geological Survey

Description

This repository holds the data and code for the manuscript "Scanning the horizon for invasive plant threats using a data-driven approach". 

Contents

  • code: descriptions below
  • data: descriptions below
  • intermediate-data: datasets produced by processing original data (see code) or produced through horizon scan process (descriptions below)
  • fl-plants-horizon-scan.Rproj: RStudio project for running R scripts

 

code description
gcw_processing.R R script to format data downloaded from the Global Compendium of Weeds
native_introduced_ranges.R R script to create map of native and introduced ranges of taxa on the final list
random_draws_plant_families.R R script to evaluate over- and underrepresentation of plant families in initial and final list
review_process_comparison.R R script to evaluate differences in scores before and after peer-review and consensus-building
scores_certainty_pathways.R R script to create figures of scores, certainty, and pathways for final list
risk_scores_analys.R R script to evaluate final risk scores
pathways_process.R R script to process pathways to introduction data
taxa_list_processing.R R script to create list used for rapid risk assessments from an initial list

 

data description
cab_list_full.csv list of potential invasive species to Florida generated by CABI Horizon Scan Tool on November 15, 2019
GCW_full_list_020420.csv Global Compendium of Weeds downloaded on February 4, 2020
PlantAtlasDataExport-20191211-194219.csv Atlas of Florida plants downloaded December 11, 2019
Taxon_x_List_GloNAF_vanKleunenetal2018Ecology_121119.csv GloNAF 1.2 database downloaded December 11, 2019
the-plant-list The Plant List Database downloaded August 3, 2021

 

intermediate-data description
federal_noxious_weed_list.csv manually formatted version of the USDA Federal Noxious Weed List downloaded March 16, 2020
first_round_assessments_050120.csv rapid risk assessments for horizon scan pre-peer-review
fl_prohibited_plants.csv manually compiled list of prohibited plants in Florida based on the Florida Noxious Weed List, Florida Prohibited Plants list, and Florida Invasive Species Council (all downloaded March 9, 2020)
horizon_scan_plants_full_reviews_080321.csv rapid risk assessments for horizon scan post-peer-review and consensus-building

 

Files

aekendig/fl-plants-horizon-scan-v1.0.zip

Files (41.0 MB)

Name Size Download all
md5:952a3ad12450650f39c5d9131b1da63b
41.0 MB Preview Download

Additional details

Related works

Is continued by
Dataset: https://github.com/aekendig/fl-plants-horizon-scan/tree/v1.0 (URL)
Is supplement to
Preprint: https://preprints.arphahub.com/article/76705/ (URL)