Published August 1, 2022 | Version v1

Supplementary material for: Phylogeny and biogeography of the ancient spider family Filistatidae (Araneae) is consistent both with long-distance dispersal and vicariance following continental drift

  • 1. Museo Argentino de Ciencias Naturales Bernardino Rivadavia

Description

Raw data and input files for phylogenetic and biogeographic analysis of the article "Phylogeny and biogeography of the ancient spider family Filistatidae (Araneae) is consistent both with long-distance dispersal and vicariance following continental drift".

Supplementary material S1. Matrix of phenotypic characters in .ss format.

Supplementary material S2. Alignment of COI sequences in fasta format..

Supplementary material S3. Alignment of H3 sequences in fasta format.

Supplementary material S4. Alignment of 16S sequences in fasta format before trimming with gblocks.

Supplementary material S5. Alignment of 28S sequences in fasta format before trimming with gblocks.

Supplementary material S6. Input for running parsimony analysis using TNT (phenotypic data only).

Supplementary material S7. Input for running Bayesian inference using MrBayes (phenotypic data only).

Supplementary material S8. Input for running parsimony analysis using TNT (sequence data only).

Supplementary material S9. Input for running Bayesian inference using MrBayes (sequence data only).

Supplementary material S10. Input for running parsimony analysis using TNT (total evidence).

Supplementary material S11. Input for running Bayesian inference using MrBayes (total evidence).

Supplementary material S12. Input for running parsimony analysis using TNT (total evidence, dataset with reduced number of terminals).

Supplementary material S13. Input for running Bayesian inference using MrBayes (total evidence, dataset with reduced number of terminals).

Supplementary material S14. Input for running Bayesian inference using MrBayes (total evidence) and estimating node ages using tip-dating.

Supplementary material S15. Input for running Bayesian inference using Beast (sequence data only) and estimating node ages using node-dating.

Supplementary material S16. Raw geographic distances among areas in each time slice and dispersal probability matrices for each biogeographic model.

Supplementary material S17. Inputs for estimating ancestral ranges and performing biogeographic stochastic maps for our dataset.

Supplementary material S18. Consensus tree found with parsimony analysis using TNT (phenotypic data only).

Supplementary material S19. Consensus tree found with Bayesian inference using MrBayes (phenotypic data only).

Supplementary material S20. Consensus tree found with parsimony analysis using TNT (sequence data only).

Supplementary material S21. Consensus tree found with Bayesian inference using MrBayes (sequence data only).

Supplementary material S22. Consensus tree found with parsimony analysis using TNT (total evidence).

Supplementary material S23. Consensus tree found with Bayesian inference using MrBayes (total evidence).

Supplementary material S24. Consensus tree found with parsimony analysis using TNT (total evidence, dataset with reduced number of terminals).

Supplementary material S25. Consensus tree found with Bayesian inference using MrBayes (total evidence, dataset with reduced number of terminals).

Supplementary material S26. Consensus tree found with Bayesian inference using MrBayes (total evidence) and with node ages estimated using tip-dating.

Supplementary material S27. Maximum clade credibility tree found with Bayesian inference using Beast (sequence data only) and with node ages estimated using node-dating.

Files

S15-SUPMAT-NODEDATING.xml

Files (5.2 MB)

Name Size
md5:71d1c1347edb3face9a827eb46947175
66.4 kB Download
md5:d5db6368e6cfa953cfdccd51c4f41106
543.0 kB Download
md5:da60ecc3bf17173f710476f838972614
532.3 kB Download
md5:f1041c759679ea892d052ad7c2340126
544.7 kB Download
md5:0e7afed15d140e927e5b7e997557acaa
532.3 kB Download
md5:716023c416fd98c00b74cbfc66e43b5f
541.2 kB Download
md5:6577004ecf1198d78a5ee90d9751bb8e
474.3 kB Preview Download
md5:a4f54c2caeefc82c283c80b3185fd708
59.9 kB Download
md5:0d4b71a49caf3adfa03bc790395e788d
153.1 kB Preview Download
md5:80c57285841e7cef98c76e9e83c26287
2.8 kB Download
md5:8f35bc240fd9397ce70f772b84fbcb5b
50.6 kB Download
md5:f5d352b1f1f22b50c2de73a76cf8f71d
107.5 kB Download
md5:c758da50fe86d2e5bb838908585b02f8
3.1 kB Download
md5:1a4ef1e89c056ea08dfabb11c2d8be07
46.3 kB Download
md5:f3d3911c21c09521498c08f19f8d15be
3.5 kB Download
md5:7076593baa6f005034dbfac6a21660d6
56.3 kB Download
md5:15326f67b20b605e3b7f3dfddeeaf93f
2.0 kB Download
md5:ab99cb218ae168c9f95f187eeb2d210b
31.7 kB Download
md5:513df6694f48a6803f2247387138374e
147.9 kB Download
md5:a3566ecb2f432c4848dd81ac1f153042
116.6 kB Download
md5:23bfd6c46ee4f0b68754c4421d8ff6f1
28.3 kB Download
md5:06e9927437a3192f4f1141068966ec70
60.2 kB Download
md5:2095417c47db61955a779384f2726cdc
203.6 kB Download
md5:9f676b85d0348511ad41d9df844877d0
66.2 kB Download
md5:e0f9d155e6028a1f27de5173c2fa8083
42.9 kB Download
md5:40660111668c8a5270e66affad73a6b5
393.9 kB Download
md5:df97f3e4ac2afd43c83e46d2fdc8d923
394.8 kB Download