Single-cell datasets for temporal gene expression integration

Contains loom files and preprocessed adata objects to compare methods for temporal gene expression integration. Loom files can be accessed using the 'read' function in Scvelo. Preprocessed adata objects can be accessed using the 'read_h5ad' function in Scanpy.

The raw single-cell RNA sequencing datasets can be found under the following accession codes: GSE81682 for hematopoiesis differentiation (https://doi.org/10.1182/blood-2016-05-716480), GSE94383 for LPS stimulation (https://doi.org/10.1016/j.cels.2017.03.010), GSE161465 for INFy stimulation (https://doi.org/10.1038/s41587-020-00803-5), GSE116481 for AML chemotherapy (https://doi.org/10.1038/s41591-018-0233-1), GSE126068 for AML diagnosis/relapse (https://doi.org/10.1038/s41375-021-01338-7), GSE138266 for MS case/control PBMC and CSF datasets (https://doi.org/10.1038/s41467-019-14118-w) and E-MTAB-2805 for mouse embryonic cell cycle (https://doi.org/10.1038/nbt.3102) datasets, respectively.