O'Hare et al 2022

Data and code to reproduce results in O'Hare et al., 2022. 

Simply unpack data.zip to your destination of choice and, for each notebook in notebooks.zip, set variable 'dataDir' to that location.

As mentioned at the top of each notebook, they were created on an iPython2.7 kernel using jupyter notebook with nbextensions to enable toggling by figure. Without toggling, these notebooks will be unwieldy.

Code is shown exactly as used to produce each data figure in our manuscript. Feel free to explore the datasets further - most are stored as Pandas DataFrames in .pkl files and are thoroughly annotated, e.g. with animal ID, dendrite type, dendrite order, dendrite path distance to soma, dendrite parent soma, ROI genotype, etc. Enjoy!