Biodiversity Literature Repository

Submit to community
Liberated Data
Published January 1, 2021 | Version v1
Journal article Restricted

Streptomyces gossypiisoli sp. nov., isolated from cotton soil in Xinjiang, PR China

Authors/Creators

Description

Zhang, Qiao-Yan, Qin, Song, Luo, Xiao-Xia, Xia, Zhan-Feng (2021): Streptomyces gossypiisoli sp. nov., isolated from cotton soil in Xinjiang, PR China. International Journal of Systematic and Evolutionary Microbiology (004561) 71 (1): 1-6, DOI: 10.1099/ijsem.0.004561, URL: http://dx.doi.org/10.1099/ijsem.0.004561

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:AD30FF8255162101FFCCFF4EFFC3FFFA
URL
http://publication.plazi.org/id/AD30FF8255162101FFCCFF4EFFC3FFFA

Has part
Taxonomic treatment: 10.5281/zenodo.6310154 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/510987FA55152105FCF0F919FBE6F94A (URL)
Figure: 10.5281/zenodo.6048684 (DOI)
Dataset: http://table.plazi.org/id/8DDF666455142103FFB5FFF9FBC1FED3 (URL)
Figure: 10.5281/zenodo.6048688 (DOI)
Figure: 10.5281/zenodo.6048692 (DOI)
Is source of
Dataset: http://www.gbif.org/dataset/f9ed9df2-74da-4972-8bf2-333760633480 (URL)

References

  • 1. Salam N, Jiao J-Y, Zhang X-T, Li W-J. Update on the classification of higher ranks in the phylum Actinobacteria. Int J Syst Evol Microbiol 2020;70:1331-1355.
  • 2. Waksman SA, Henrici AT. The nomenclature and classification of the actinomycetes. J Bacteriol 1943;46:337-341.
  • 3. Skerman VBD, Sneath PHA, McGowan V. Approved Lists of bacterial names. Int J Syst Evol Microbiol 1980;30:225-420.
  • 4. Williams ST, Goodfellow M, Alderson G, Wellington EMH, Sneath PHA et al. Numerical classification of Streptomyces and related genera. Microbiology 1983;129:1743-1813.
  • 5. Zhang Z, Wang Y, Ruan J. A proposal to revive the genus Kitasatospora (Omura, Takahashi, Iwai, and Tanaka 1982). Int J Syst Bacteriol 1997;47:1048-1054.
  • 6. Kim SB, Lonsdale J, Seong C-N, Goodfellow M. Streptacidiphilus gen. nov., acidophilic actinomycetes with wall chemotype I and emendation of the family Streptomycetaceae (Waksman and Henrici (1943)AL) emend. Rainey et al. 1997. Antonie van Leeuwenhoek 2003;83:107-116.
  • 7. Ochi K, Hiranuma H. A taxonomic review of the genera Kitasatosporia and Streptoverticillium by analysis of ribosomal protein AT-L30.Int J Syst Bacteriol 1994;44:285-292.
  • 8. Ping X, Takahashi Y, Seino A, Iwai Y, Omura S. Streptomyces scabrisporus sp. nov. Int J Syst Evol Microbiol 2004;54:577-581.
  • 9. Nagai A, Khan ST, Tamura T, Takagi M, Shin-Ya K. Streptomyces aomiensis sp.nov.,isolated from a soil sample using the membranefilter method. Int J Syst Evol Microbiol 2011;61:947-950.
  • 10. Manfio GP, Zakrzewska-Czerwinska J, Atalan E, Goodfellow M. Towards minimal standards for the description of Streptomyces species. Biotechnologiia 1995;8:228-237.
  • 11. Lechevalier MP, Lechevalier H. Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 1970;20:435-443.
  • 12. McCarthy AJ, Williams ST. Actinomycetes as agents of biodegradation in the environment--a review. Gene 1992;115:189-192.
  • 13. Lazzarini A, Cavaletti L, Toppo G, Marinelli F. Rare genera of actinomycetes as potential producers of new antibiotics. Antonie van Leeuwenhoek 2000;78:399-405.
  • 14. Shirling EB, Gottlieb D. Methods for characterization of Streptomyces species. Int J Syst Bacteriol 1966;16:313-340.
  • 15. Pridham TG, Gottlieb D. The utilization of carbon compounds by some Actinomycetales as an aid for species determination. J Bacteriol 1948;56:107-114.
  • 16. Williams ST, Goodfellow M, Alderson G, Wellington EM, Sneath PH et al. Numerical classification of Streptomyces and related genera. J Gen Microbiol 1983;129:1743-1813.
  • 17. Kampfer P, Steiof M, Dott W. Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria.Microb Ecol 1991;21:227-251.
  • 18. Hasegawa T, Takizawa M, Tanida S. A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 1983;29:319-322.
  • 19. Shah HN, Collins MD. Fatty acid and isoprenoid quinone composition in the classification of Bacteroides melaninogenicus and related taxa. J Appl Bacteriol 1980;48:75-87.
  • 20. Groth I, Schumann P, Rainey FA, Martin K, Schuetze B et al. Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 1997;47:1129-1133.
  • 21. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids.J Microbiol Methods 1984;2:233-241.
  • 22. SasserM. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, 20. USFCC Newsl; 1990. pp. 1-6.
  • 23. Kim SB, Brown R, Oldfield C, Gilbert SC, Iliarionov S et al. Gordonia amicalis sp. nov., a novel dibenzothiophenedesulphurizing actinomycete. Int J Syst Evol Microbiol 2000;50 Pt 6:2031-2036.
  • 24. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically United database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017;67:1613-1617.
  • 25. Labeda DP, Dunlap CA, Rong X, Huang Y, Doroghazi JR et al. Phylogenetic relationships in the family Streptomycetaceae using multi-locus sequence analysis. Antonie van Leeuwenhoek 2017;110:563-583.
  • 26. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016;33:1870-1874.
  • 27. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987;4:406-425.
  • 28. Felsenstein J. Evolutionary trees from DNA sequences:a maximum likelihood approach. J Mol Evol 1981;17:368-376.
  • 29. Mount DW. Maximum parsimony method for phylogenetic prediction. CSH Protoc 2008 2008:pdb top32.
  • 30. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980;16:111-120.
  • 31. Gouy M, Guindon S, Gascuel O. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 2010;27:221-224.
  • 32. Darriba D, Taboada GL, Doallo R, Posada D. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 2011;27:1164-1165.
  • 33. Felsenstein J. Estimating effective population size from samples of sequences: a bootstrap Monte Carlo integration method. Genet Res 1992;60:209-220.
  • 34. Rong X, Huang Y. Taxonomic evaluation of the Streptomyces hygroscopicus clade using multilocus sequence analysis and DNA-DNA hybridization, validating the MLSA scheme for systematics of the whole genus. Syst Appl Microbiol 2012;35:7-18.
  • 35. Yoon S-H, Ha S-M, Lim J, Kwon S, Chun J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie van Leeuwenhoek 2017;110:1281-1286.
  • 36. Richter M, Rossello-Mora R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 2009;106:19126-19131.