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Published January 1, 2018 | Version v1
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Pontibacter brevis sp. nov., isolated from rhizosphere soil of Tamarix ramosissima

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Osman, Ghenijan, Gao, Yan, Wang, Ning, Mahmud, Otkur, Sun, Jian, Zhang, Tao, Zhan, Faqiang, Zhang, Zhidong, Lou, Kai (2018): Pontibacter brevis sp. nov., isolated from rhizosphere soil of Tamarix ramosissima. International Journal of Systematic and Evolutionary Microbiology 68 (1): 81-86, DOI: 10.1099/ijsem.0.002455, URL: http://dx.doi.org/10.1099/ijsem.0.002455

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Identifiers

LSID
urn:lsid:plazi.org:pub:C558FFBDFF91334BFFEEFF8B6525FFE4
URL
http://publication.plazi.org/id/C558FFBDFF91334BFFEEFF8B6525FFE4

Has part
Taxonomic treatment: 10.5281/zenodo.6309504 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/396187C5FF92334FFF97FA59668AFCE0 (URL)
Dataset: http://table.plazi.org/id/E5B7665BFF933349FF97FF3D6762FE4D (URL)
Figure: 10.5281/zenodo.6048417 (DOI)
Dataset: http://table.plazi.org/id/E5B7665BFF95334FFF97FF3D65D6FE90 (URL)
Is source of
Dataset: http://www.gbif.org/dataset/42d45767-1778-44ad-9263-f6e303977d24 (URL)

References

  • 1. Nedashkovskaya OI, Kim SB, Suzuki M, Shevchenko LS, Lee MS et al. Pontibacter actiniarum gen. nov., sp. nov., a novel member of the phylum 'Bacteroidetes ', and proposal of Reichenbachiella gen. nov. as a replacement for the illegitimate prokaryotic generic name Reichenbachia Nedashkovskaya et al. 2003. Int J Syst Evol Microbiol 2005;55:2583-2588.
  • 2. Subhash Y, Tushar L, Sasikala C, Ramana C. Erythrobacter odishensis sp. nov. and Pontibacter odishensis sp. nov. isolated from dry soil of a solar saltern. Int J Syst Evol Microbiol 2013;63:4524- 4532.
  • 3. Zhou YX, Xie ZH, Zhao JX, Zj D, Chen GJ. Pontibacter locisalis Sy30T sp. nov. isolated from soil collected from an abandoned saltern. Antonie van Leeuwenhoek 2016;109:1-6.
  • 4. Zhang L, Zhang Q, Luo X, Tang Y, Dai J et al. Pontibacter korlensis sp. nov., isolated from the desert of Xinjiang, China. Int J Syst Evol Microbiol 2008;58:1210-1214.
  • 5. Wang Y, Zhang K, Cai F, Zhang L, Tang Y et al. Pontibacter xinjiangensis sp. nov., in the phylum 'Bacteroidetes ', and reclassification of [Effluviibacter] roseus as Pontibacter roseus comb. nov. Int J Syst Evol Microbiol 2010;60:99-103.
  • 6. Xu M, Wang Y, Dai J, Jiang F, Rahman E et al. Pontibacter populi sp. nov., isolated from the soil of a Euphrates poplar (Populus euphratica) forest. Int J Syst Evol Microbiol 2012;62:665-670.
  • 7. Xu L, Zeng XC, Nie Y, Luo X, Zhou E et al. Pontibacter diazotrophicus sp. nov., a novel nitrogen-fixing bacterium of the family Cytophagaceae. PLoS One 2014;9:e92294.
  • 8. Nayyar N, Kohli P, Mahato NK, Lal R. Pontibacter mucosus sp. nov., isolated from hexachlorocyclohexane-contaminated pond sediment. Int J Syst Evol Microbiol 2016;66:2234-2240.
  • 9. Park S, Park JM, Lee KH, Yoon JH. Pontibacter litorisediminis sp. nov., isolated from a tidal flat. Int J Syst Evol Microbiol 2016;66: 4172-4178.
  • 10. Osman G, Zhang T, Lou K, Gao Y, Chang W et al. Pontibacter aydingkolensis sp. nov., isolated from soil of a salt lake. Int J Syst Evol Microbiol 2016;66:5523-5528.
  • 11. Cerny G. Studies on the aminopeptidase test for the distinction of gram-negative from gram-positive bacteria. Eur J Appl Microbiol 1978;5:113-122.
  • 12. Bowman JP. Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 2000;50: 1861-1868.
  • 13. Bernardet JF, Nakagawa Y, Holmes B. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 2002; 52:1049-1070.
  • 14. Wu YH, Zhou P, Jian SL, Liu ZS, Wang CS et al. Pontibacter amylolyticus sp. nov., isolated from a deep-sea sediment hydrothermal vent field. Int J Syst Evol Microbiol 2016;66:1760-1767.
  • 15. Lanyi B. Classical and rapid identification methods for medically important bacteria. Methods Microbiol 1987;19:1-67.
  • 16. Krieg NR, Padgett PJ. Phenotypic and physiological characterization methods. Methods Microbiol 2011;38:15-60.
  • 17. Jordan EM, Thompson FL, Zhang XH, Li Y, Vancanneyt M et al. Sneathiella chinensis gen. nov., sp. nov., a novel marine alphaproteobacterium isolated from coastal sediment in Qingdao, China. Int J Syst Evol Microbiol 2007;57:114-121.
  • 18. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBio-Cloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017;67:1613-1617.
  • 19. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016;33:1870-1874.
  • 20. Mesbah M, Premachandran U, Whitman WB. Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 1989;39: 159-167.
  • 21. Graham PH, Sadowsky MJ, Keyser HH, Barnet YM, Bradley RS et al. Proposed minimal standards for the description of new genera and species of root- and stem-nodulating bacteria. Int J Syst Bacteriol 1991;41:582-587.
  • 22. De Ley J, Cattoir H, Reynaerts A. The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 1970; 12:133-142.
  • 23. Stackebrandt E, Frederiksen W, Garrity GM, Grimont PA, K€ ampfer P et al. Report of the ad hoc committee for the reevaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 2002;52:1043-1047.
  • 24. Collins MD. Isoprenoid quinone analysis in classification and identification. In: Goodfellow M, Minnikin DE (editors). Chemical Methods in Bacterial Systematics. London: Academic Press; 1985. pp. 267-287.
  • 25. Kroppenstedt RM. Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 1982;5:2359-2367.
  • 26. Minnikin DE, Collins MD, Goodfellow M. Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 1979;47:87-95.
  • 27. Cao H, Nie Y, Zeng XC, Xu L, He Z et al. Pontibacter yuliensis sp. nov., isolated from soil. Int J Syst Evol Microbiol 2014;64: 968-972.
  • 28. Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014;64:346-351.