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Published February 5, 2022 | Version v1

Sample graphs and sequences for testing sequence-to-graph alignment

Authors/Creators

  • 1. DFCI & HMS

Description

File descriptions:

  • HLA-61.agc: 61 complete HLA sequences, including GRCh38, CHM13 and 59 haplotypes extracted from HPRC year-1 assemblies. Use AGC to extract individual haplotype sequences.
  • HLA-57.gfa.gz: sequence graph constructed by minigraph-r434, excluding sample HG002 and HG005
  • C4-96.agc: 96 complete C4 sequences obtained from HPRC
  • C4-90.gfa.gz: sequence graph extracted from the full HPRC year-1 minigraph graph around the C4A/C4B genes. The graph takes GRCh38 as the reference and excludes sample HG002, HG005 and NA19240.

Files

Files (4.1 MB)

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md5:ef617f70f09d0817f436ace3e74af0af
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md5:ec881c1b0e7fb48eb29aff5ecf4636a5
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md5:9d9b7afdd1486173a11c2882af90a6d5
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