Published January 26, 2022 | Version v1
Dataset Open

A hifi testing dataset derived from SRR13128014 (zymo D6331)

Creators

  • 1. DFCI

Description

This is a small dataset subsampled from SRR13128014 which represents a mock community, zymoBIOMICS D6331.

 

We extraced E.coli reads by alignment, then used `seqtk subseq read.fq.gz 0.1` to randomly pick 10% from them. This is created for testing if hifiasm-meta (https://github.com/xfengnefx/hifiasm-meta ) runs. For r57, it roughly needs 170s on 48 threads with peak memory of 18GB. Refer to the tar.gz file for expected results. Hicanu and metaflye should be able to successfully run on this dataset as well.

Files

Files (418.8 MB)

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md5:5dd0425a9e757daf372f2b1f477b6554
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