Published January 30, 2022
| Version v3
Dataset
Open
Processing single-cell RNA-seq datasets using SingCellaR
Authors/Creators
- 1. MRC Molecular Haematology Unit, MRC WIMM, University of Oxford, Oxford, OX3 9DS, UK
Description
- cellranger_output.zip : Zipped files for cellranger output
- Code.zip: This contains the code for Step2-7
- Human_genesets.zip: This includes the geneset signatures (.gmt) files we used in the protocol and original study (Roy et al, 2021)
- Human_HSPC_All.SingCellaR.rdata: The SingCellaR objects generated in Step 4 on a local computer
- ABM_1.SingCellaR.rdata: The SingCellaR objects generated in Step 3 on a local computer
- eFL_All.SingCellaR.rdata: The SingCellaR objects generated in Step 3 on a local computer
- FBM_All.SingCellaR.rdata: The SingCellaR objects generated in Step 3 on a local computer
- FL_All.SingCellaR.rdata: The SingCellaR objects generated in Step 3 on a local computer
- PBM_All.SingCellaR.rdata: The SingCellaR objects generated in Step 3 on a local computer
- meta.data.txt: meta data includes the donor and batch information
Files
cellranger_output.zip
Files
(2.3 GB)
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