Published January 14, 2022 | Version v1
Dataset Restricted

Processed data supplementary to "Systematic benchmarking of single-cell ATAC sequencing protocols"

Authors/Creators

  • 1. VIB Center for Brain and Disease Research, 3000 Leuven, Belgium
  • 2. Institut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), 08036 Barcelona, Spain
  • 3. CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain
  • 4. Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
  • 5. Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
  • 6. Department of Genetics, Stanford University, Stanford, CA, USA.
  • 7. Gladstone Institute of Neurological Disease, San Francisco, CA 94158
  • 8. Wellcome Sanger Institute, Cambridge CB10 1SA, UK
  • 9. Molecular and Medical Genetics, Oregon Health & Science University, Portland, OR, USA
  • 10. Department of Genetics, Stanford University, Stanford, CA, USA

Description

Fragments.tsv.gz for all 15 samples + merged, each for the full sequencing data and library downsampled data (42k reads/cell for each sample). Also contains expression matrices for the multiome (full_10x_Multiome_?_RNA_gex.zip) and 10x scRNA-seq data (10x_scRNA_?_gex.zip).

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