List of publicly available cellular reprogramming HTS datasets

These datasets were obtained by manual curation via the following procedure: First, I queried GEO using keywords in the list below. 

1. Yamanaka
2. Yamanaka AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) 
3. Reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) 
4. OSKM AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) 
5. Sox2 AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) 
6. Sox2 reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) 
7. somatic reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) 
8. somatic cell reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) 
9. Reprogramming pluripotency AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) 
10. Reprogramming pluripotency 
11. Reprogramming pluripotency AND ("Methylation profiling by high throughput sequencing"[Filter]) 
12. OSKM AND ("Methylation profiling by high throughput sequencing"[Filter]) 
13. Sox2 Reprogramming AND ("Methylation profiling by high throughput sequencing"[Filter]) 

Results were selected for manual input if they contained either transcriptomic (e.g., RNA-Sequencing) or epigenomics (e.g., RRBS) data and had at least one intermediate cellular reprogramming timepoint.