Published April 1, 2022
| Version v1
Dataset
Open
Genetic and epigenetic differentiation across intertidal gradients in the foundation plant Spartina alterniflora
Authors/Creators
- Mounger, Jeannie M.1
- van Riemsdijk, Isolde2
- Boquete, M. Teresa3
- Wagemaker, Cornelis A.M.4
- Fatma, Samar5
- Robertson, Marta H.6
- Voors, Sandy A.1
- Oberstaller, J.7
- Gawehns, Fleur8
- Hanley, Torrance C.9
- Grosse, Ivo5
- Verhoeven, Koen J.F8
- Sotka, Erik E.10
- Hughes, A. Randall9
- Gehring, Catherine A.11
- Lewis, David B.1
- Schmid, Marc W.12
- Richards, Christina L.2
- 1. Department of Integrative Biology, University of South Florida, Tampa, FL, USA
- 2. Plant Evolutionary Ecology Group, University of Tübingen, Tübingen, Germany
- 3. Department of Evolutionary Ecology, CSIC, Estación Biológica de Doñana, Sevilla, Spain
- 4. Department of Experimental Plant Ecology, Radboud University, Nijmegen, The Netherlands
- 5. Bioinformatics, Institut für Informatik, Martin-Luther-University Halle-Wittenberg, Germany
- 6. Biology Department, Wesleyan University, Middletown, CT, USA
- 7. Center for Global Health and Infectious Diseases Research and USF Genomics Program, College of Public Health, University of South Florida, Tampa, FL, USA
- 8. Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, the Netherlands
- 9. Marine Science Center, Northeastern University, Nahant, MA, USA
- 10. Department of Biology and Grice Marine Laboratory; College of Charleston, SC, USA
- 11. Department of Biological Science and the Center for Adaptable Western Landscapes, Northern Arizona University, Flagstaff, AZ, USA
- 12. MWSchmid GmbH, Glarus, Switzerland
Description
This record contains supplementary information for the article "Genetic and epigenetic differentiation across intertidal gradients in the foundation plant Spartina alterniflora". It contains the barcodes (barcodes.txt), the reference contigs (contigs.fasta.gz), the annotation of the reference contigs (mergedAnnot.csv.gz), the SNPs (snps.vcf.gz), the methylation data (methylation.txt.gz), and the experimental design (design.txt). All data are unfiltered.
All reads are available on SRA (PRJNA798549). Note that the barcode sequences and the control nucleotide were already removed from the demultiplexed files (hence, for each sample, reads are also split into "watson" and "crick" based on the control nucleotide).
Files
barcodes.txt
Files
(8.1 GB)
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md5:15ed411999370a9318a00c311a34a44f
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md5:f0963cce570a99b2e0bcbc126c6c94f7
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md5:535f797200089dde22a0ddaf61c8f69a
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6.5 GB | Download |