Complete Genome Sequence of an Aeromonas rivuli Strain Isolated from Ready-to-Eat Food - Data Files
Authors/Creators
- 1. German Federal Institute for Risk Assessment (BfR), Department of Biological Safety, Berlin, Germany
Description
This dataset contains input and intermediate files of the bcgTree analysis described in the Schwartz et al. MRA manuscript entitled “Complete Genome Sequence of an Aeromonas rivuli Strain Isolated from Ready-to-Eat Food”.
|
File name |
Description |
|
‘Aeromonadaceae identifier’.fa |
Amino acid FASTA file of the translated CDS sequences of a strain X (bcgTree input file) |
|
full_alignment.concat.fa |
Alignment of the concatenated amino acid sequences of 107 single-copy core genes that is used for phylogenetic tree calculation in bcgTree (bcgTree intermediate file) |
In the bcgTree files, the Aeromonadaceae sequences were named/abbreviated as follows:
|
Sequence name in the bcgTree file |
Description |
|
AAZUK01-1 |
Tolumonas lignilytica BRL6-1 |
|
Aeromonas-caviae |
Aeromonas caviae NCTC 12244 |
|
Aeromonas-dhakensis |
Aeromonas dhakensis CIP 107500 |
|
Aeromonas-hydrophila |
Aeromonas hydrophila ATCC 7966 |
|
Aeromonas-rivuli |
Aeromonas rivuli DSM 22539 |
|
Aeromonas-rivuli-20-VB00005 |
Aeromonas rivuli 20-VB00005 |
|
Aeromonas-veronii |
Aeromonas veronii CECT 4257 |
|
CP001616-1 |
Tolumonas auensis DSM 9187 |
|
JACHGR01-1 |
Tolumonas osonensis DSM 22975 |
Files
Files
(13.3 MB)
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md5:389eb2d36de8760dbd1451e5327e1853
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1.3 MB | Download |
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md5:a1b2c3b718438e6409c4fe8700a32512
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1.5 MB | Download |
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md5:9cbafbb0ee1377f1a8d760bc9fa7b52d
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1.6 MB | Download |
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md5:de42d6e96069148711f54828af3fc2fe
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1.6 MB | Download |
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md5:a682d3190671a999192121691b9396ed
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1.5 MB | Download |
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md5:8650fc769b68fddb9c23949031bbd95d
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1.5 MB | Download |
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md5:20d9188f2bb5ba52e1ea2e53ba761f40
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1.5 MB | Download |
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md5:1094d219fefbfcddd53d282e0aa5cb06
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1.2 MB | Download |
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md5:a767593125609bb2734af5d05b077581
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323.1 kB | Download |
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md5:8e871a86d86e8aae0bf6c38086ad6089
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1.2 MB | Download |