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Published January 6, 2022 | Version v1
Dataset Open

AGC archives of human and SARS-CoV-2 genomes

Creators

  • 1. Silesian University of Technology
  • 2. DFCI & Harvard

Description

AGC is a tool to compress a collection of similar genomes. This Zenodo record provides pre-built AGC archives of several datasets:

  • File "HPRC-yr1.agc" contains CHM13 and 94 haploid human assemblies released by HPRC in 2021. The telomere-to-telomere CHM13 v1.1 plus chrY from GRCh38 is used as the reference genome.
  • File "sars-cov-2_ncbi-620k.agc" contains 619,750 complete SARS-CoV-2 genomes with NC_045512.2 as the reference. It was created with AGC command line "agc create -cb10000 -s5000". SARS-CoV-2 genomes were downloaded from NCBI at the end of year 2021. The original FASTA is provided as "sars-cov-2_ncbi-620k.fa.xz".

Files

Files (1.5 GB)

Name Size Download all
md5:4e9608ee808a9728bc1c7ee8496f7c30
1.5 GB Download
md5:4690b70401de2c2f08e2c64fcd0c3a31
28.0 MB Download
md5:0a3140edb6a67e7133be748b5af422a4
56.3 MB Download