The LOTUS Initiative for Open Natural Products Research: wikidata query results
- 1. University of Geneva
- 2. University of Illinois at Chicago
- 3. University of Fribourg
- 4. https://www.wikidata.org/
Description
Wikidata query results returned by the downloadLotus module of the https://github.com/lotusnprod/lotus-wikidata-interact program.
See details of the module here https://github.com/lotusnprod/lotus-wikidata-interact/blob/main/downloadLotus/README.md
This dataset is constituted of 4 tables.
- compounds.tsv - chemical structures metadata (wikidataId, canonicalSmiles, isomericSmiles, inchi, inchiKey)
- references.tsv - bibliographical references metadata (wikidataId, pipe separated DOIs, titles)
- taxa.tsv - biological organisms metadata (wikidataId, pipe separated names, taxa rank)
- compound_reference_taxon.tsv - the documented structure-organism pairs
This dataset includes not only the outputs of the LOTUS processing pipeline (available here https://doi.org/10.5281/zenodo.5665295 ) but also any of wikidata chemical compounds having the found in taxon property (https://www.wikidata.org/wiki/Property:P703) and their associated organisms and documenting references.
Files
Files
(245.2 MB)
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md5:3b9793790f5d34be17cc17447ff3370e
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117.1 MB | Download |
md5:94b5e0bee6688528685e46888e4f20c6
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111.9 MB | Download |
md5:68ed9e8a97ba7f7ff4678baa87975e45
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13.5 MB | Download |
md5:04e6ec189bbe6889bc4bcc871716fdfc
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2.7 MB | Download |