Published December 6, 2021 | Version v3

Functional connectomes denoised with various strategies

Authors/Creators

  • 1. CRIUGM

Description

Dataset denoised with the following strategies:

https://github.com/SIMEXP/fmriprep-denoise-benchmark/code/benchmark_strategies.json

Atlas used:

Schaefer 7 network 400 ROIs

Preprocessing:

fMRIPrep LTS 20.2.1

singularity run --cleanenv \
-B $SLURM_TMPDIR:/DATA \
-B /PATH/TO/templateflow:/templateflow \
-B /etc/pki:/etc/pki/ \
-B /PATH/TO/OUTPUT:/OUTPUT \
/PATH/TO/fmriprep-20.2.1lts.sif \
-w /DATA/fmriprep_work \
--participant-label pixar001 \
--bids-filter-file /OUTPUT/bids_filters.json \
--cifti-output 91k \
--use-aroma  \
--output-spaces MNI152NLin2009cAsym MNI152NLin6Asym fsaverage5 \
--output-layout bids \
--notrack \
--skip_bids_validation \
--write-graph \
--omp-nthreads 8 \
--nprocs 16 \
--mem_mb 65536 \
--resource-monitor \
/DATA/ds000288 /DATA/ds000288/derivatives/fmriprep participant 

 

Files

Files (1.7 GB)

Name Size
md5:cb3eaa010d39fab54e314d766be6625a
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