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Published September 21, 2021 | Version v13

Summary of sequence variations in strains of Sars-CoV-2

Authors/Creators

  • 1. Garvan Institute of Medical Research

Description

This entry collects JSON files specifying sequence variations of different strains (aka variants) of SARS-CoV-2 based on data retrieved from outbreak.info and/or covariants.org. These JSON files are formatted to match the Feature API of aquaria.ws.  File names match the linage names of VOCs and VOIs. In the case of omicron we have added a version (omicron_charge) that highlights charge changing residues in magenta. CovidStrains.pdf lists SARS-CoV-2 proteins together with links that show how to map variations onto the structures.

Files

alpha.json

Files (106.8 kB)

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md5:3f205e73ea0a5d43df23644d1f148e30
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md5:7fa41858fe44fa9ace39a73b34b1b6ca
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