Published December 2, 2021
| Version v1
Dataset
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Graph genomes from Talenti et al.: A cattle graph genome incorporating global breed diversity pt.1
Authors/Creators
-
Talenti, Andrea1
- Powell, Jessica1
- Hemmink, Johanneke1
- Cook, Elizabeth2
- Wragg, David1
- Jayaraman, Siddharth1
- Paxton, Edith1
- Ezeasor, Chukwunonso3
- Obishakin, Emmanuel4
- Agusi, Ebere4
- Tijjani, Abdulfatai5
- Marshall, Karen6
- Fisch, Andressa7
- Ferreira, Beatriz7
- Qasim, Ali8
- Chaudhry, Umer1
- Weiner, Pamela1
- Toye, Phil6
- Morrison, Liam1
- Connelley, Timothy1
- Prendergast, James1
- 1. The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, United Kingdom
- 2. The International Livestock Research Institute, PO Box 30709, Nairobi, Kenya
- 3. Department of Veterinary Pathology and Microbiology, University of Nigeria, Nsukka. Enugu State, Nigeria
- 4. Biotechnology Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria.
- 5. International Livestock Research Institute (ILRI) PO 5689, Addis Ababa, Ethiopia
- 6. The International Livestock Research Institute, PO Box 30709, Nairobi, Kenya.
- 7. Ribeirão Preto College of Nursing, University of Sao Paulo, Ribeirão Preto, SP, Brazil
- 8. Faculty of Veterinary and Animal Sciences, Gomal University, Dera Ismail Khan, Pakistan
Description
# Supplementary data for Talenti et al.: A cattle graph genome incorporating global breed diversity (pt.1)
This repository contains the first part of the supplementary data for Talenti el al., and provide access to the the following graphs described in the paper:
1. VG1.zip: zipped folder with the linear indexed VG graph generated from the ARS-UCD1.2 genome
2. VG5p.zip: zipped folder with the indexed VG graph generated from the chromosome-wide alignments of five cattle assemblies further expanded with 11M variants from Dutta et al. (2020)
3. BTau_alignment.zip: CACTUS-generated graph alignments of the five cattle genomes