Supplementary Data for: Human pathogenic RNA viruses establish non-competing lineages by occupying independent niches

Alignments ORFeome alignments (excluding stop codons) with the exception of SARS-CoV-2.

Correlated Subtrees Subtrees representing all correlated-clades (genealogical lineages; GL) in Newick format.

Diversity TMRCA and Skyline Plots .png files.

e/d/n/o Subtrees EVA and H3N2 subtrees, evenly and diversely sampled as well as “early” and “late” subtrees for H3N2.

Genealogical Trees Including global topologies (.main), subtrees, and grafted trees (.grafted).

ORF References The first and last nucleotide of each ORF in the reference sequence.

Redundancy Tables List of all redundant isolates and the corresponding representative in the ORFeome-unique alignment.

Reference Sequences Genbank page for all reference sequences.

Rooted Trees Global topologies for each virus.

Ultrametric Trees For each global topology.