Published November 17, 2021
| Version v4.0.5
Software
Open
rsetienne/DAISIE: v4.0.5
Creators
- 1. @tece-lab, University of Groningen
- 2. University of Groningen
- 3. University of Uppsala
Description
DAISIE 4.0.5
N.B.: MacOS users may experience issues when installing DAISIE, especially when on MacOS Big Sur. If that is you case, please see here for detailed installation instructions.
- CS model can be fit with C++ code, similarly to the IW model since version v3.2.0. To do so, set
methode
to:"odeint::runge_kutta_cash_karp54"
"odeint::runge_kutta_fehlberg78"
[default]"odeint::runge_kutta_dopri5"
"odeint::bulirsch_stoer"
without the odeint::
-prefix, the deSolve::ode
method is assumed. deSolve::ode
using "lsodes"
is still the default, as before. Make sure CS_version = 0
(default) to use C++ ODEINT numerical integration.
- Better handling of number of threads to use with
DAISIE_IW_num_threads()
for ML estimation of the IW model when more threads are available. - Fixes to numerical instability in conditional probability calculation in the IW model when the probability of extinction is very close to 1.
- Introduce an approximation when the log conditional likelihood cannot be computed and add message when this is triggered.
Files
rsetienne/DAISIE-v4.0.5.zip
Files
(1.1 MB)
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md5:b3d5c6b3de8e638b9aa22901699bdd88
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Additional details
Related works
- Is supplement to
- https://github.com/rsetienne/DAISIE/tree/v4.0.5 (URL)