wmglab-duke/ascent: ASCENT v1.1.0

v1.0.3 -> v1.1.0: new features

• Added runtime saving controls

• Added the ability to save action potential times at specified points along fibers

• Added the ability to generate plots in a folder instead of a popup window. Also added more options for plotting.

• Updated deformation logic to allow for deform_ratio=0 (no change to nerve trace but ensures fascicle separation)

• Installation will now generate directories required to set up ascent runs automatically

• Documentation is now hosted on Read the Docs, and part of the repo

• Added troubleshooting guide to documentation

• Added image preprocessing option to Sample

• Added fascicle and nerve smoothing options to Sample • Added welcome message to run script

v1.0.3 -> v1.1.0: bug fixes

• Fixed issues with cuff rotation logic and added "fixed_point" parameter to cuff configuration files

• Modified print statements to be more informative

• Fixed bug where sample centering was slightly off center

• Sample.py now checks that only one object is present in the orientation mask

• Changed COMSOL interpolation curve type from "open" to "closed"

• Fixed perineurium generation for Mask Input Mode = "INNERS" to use effective circular diameter instead of average radius

• Added check to ensure all morphology masks have the same dimensions

• Fixed bug where submit would always check for scout sims if the parameter was present

• Fixed issue where super sampling would cause an error

• Fixed errors with installation script and added requirements.txt file for pip

• Will now check that the pipeline is running in the ASCENT conda environment

• Archived cuffs that are no longer needed