Published November 25, 2016 | Version v1

Accurate and efficient representation of intramolecular energy in ab initio generation of crystal structures. Part I: Adaptive local approximate models

Authors/Creators

  • 1. Imperial College London

Description

The global search stage of Crystal Structure Prediction (CSP) methods requires a fine balance between accuracy and computational cost, particularly for the study of large flexible molecules. A major improvement in the accuracy and cost of the intramolecular energy function used in the CrystalPredictor II (Habgood, M., Sugden, I. J., Kazantsev, A. V., Adjiman, C. S. & Pantelides, C. C. (2015). J Chem Theory Comput 11, 1957-1969) program is presented, where the most efficient use of computational effort is ensured via the use of adaptive Local Approximate Model (LAM) placement. The entire search space of relevant molecule’s conformations is initially evaluated using a coarse, low accuracy grid. Additional LAM points are then placed at appropriate points determined via an automated process, aiming to minimise the computational effort expended in high energy regions whilst maximising the accuracy in low energy regions. As the size, complexity, and flexibility of molecules increase, the reduction in computational cost becomes marked. This improvement is illustrated with energy calculations for benzoic acid and the ROY molecule, and a CSP study of molecule XXVI from the sixth blind test (Reilly et al., (2016). Acta Cryst. B, accepted.), which is challenging due its size and flexibility. Its known experimental form is successfully predicted as the global minimum. The computational cost of the study is tractable without the need to make unphysical simplifying assumptions. 

Files

benzoic_acid_LAM_points.txt

Files (1.6 MB)

Name Size
md5:b74968e9b5046f05d6f6a941cc52c031
2.5 kB Download
md5:fa84436b330454fe9f0c3596a0cd3ab0
82 Bytes Preview Download
md5:b90a8dce322b569097f35d6bb601d998
82.8 kB Download
md5:6642d617094a284cc09afe7e30faec8d
374.0 kB Preview Download
md5:0b3714d9292ebe00a51b412eebc99f6e
6.1 kB Download
md5:a602cec64543e5391abb1d23916fcb39
1.1 MB Download
md5:ea9fd0198c7ac70e280cc31179a93eeb
2.6 kB Download
md5:0c7a31559888853d2183079b77f855c6
155 Bytes Preview Download
md5:154c9a087e5cad055d8708e9e05f2d63
144 Bytes Preview Download