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Published November 8, 2021 | Version v2.3

fmalmeida/ngs-preprocess: fmalmeida/ngs-preprocess v2.3

Authors/Creators

  • 1. University of Brasilia @compgenunb

Description

The pipeline

ngs-preprocess is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly reproducible. It is an easy to use pipeline that uses state-of-the-art software for quality check and pre-processing ngs reads of Illumina, Pacbio and Oxford Nanopore Technologies.

Version Relase notes

In summary, this release reconfigures the pipeline to be more likely nf-core pipelines enabling users to run it with docker, singularity or conda. The release notes can be checked in the CHANGELOG.md.

Files

fmalmeida/ngs-preprocess-v2.3.zip

Files (1.7 MB)

Name Size
md5:5dfe80175d8106a3cd5519deb1263c7e
1.7 MB Preview Download

Additional details

Related works