Published November 7, 2021
| Version v1
Dataset
Open
Cast Away in the Adriatic: Low Degree of Parallel Genetic Differentiation in Three-Spined Sticklebacks
Authors/Creators
- 1. Ecological Genetics Research Unit, Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, FI-00014 University of Helsinki, Finland
- 2. Department of Zoology, Faculty of Science, University of Zagreb, Rooseveltov trg 6, 10000 Zagreb, Croatia
- 3. Department of Chemistry, Biology and Biotechnologies, University of Perugia, via Elce di Sotto 8, 06123 Perugia, Italy
- 4. Division for Ecology and Biodiversity, School of Biological Sciences, Faculty of Science, The University of Hong Kong, Hong Kong SAR
Description
This repository incorporates data and scripts associated with the paper "Cast Away in the Adriatic: Low Degree of Parallel Genetic Divergence in Three-Spined Sticklebacks".
Included in the repository are the following compressed folders:
- Moments_models&data.zip: two-population demographic models and SFS to run in moments.
- Stairwayplot.zip: blueprint files for multiple mutation rates and results for StairwayPlots.
- TreeMix.zip: pipeline to infer population splits and mixture events from allele frequency data using TreeMix, including input files.
- VCF.zip: a filtered VCF file for all three-spined stickleback samples.
The scripts for TreeMix and demographic analyses in moments are also available on GitHub.
Files
Moments_models&data.zip
Additional details
Funding
- Research Council of Finland
- Centre of Excellence in Evolutionary Genetics and Physiology 129662
- Research Council of Finland
- Evolutionary Genetics of Adaptation in the Wild 218343
- Research Council of Finland
- Evolutionary genetics of adaptation in the wild 134728
- Research Council of Finland
- Evolutionary and conservation genomics of rapid ecological speciation in the Baltic Sea 316294