FASTA file containing to the MYB encoding gene Ant1 genomic sequences corresponding to wild and cultivated tomato accessions
Authors/Creators
- 1. The Ohio State University, Department of Horticulture and Crop Science
Description
Fasta sequence correspond to the MYB encoding gene An2-like. The genomic sequences correspond to Solanum galagpagnese accession LA1141 (this study), S. lycopersicum variety OH8245 (this study), S. lycopersicum variety Heinz 1706 reference genome, and 84 tomato accessions published as part of The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Local sequences databases were made and retrieved using BLAST version/2018-08 for 84 accessions from The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Sequences corresponding to Heinz 1706 (Hosmani et al., 2018), were accessed using the Basic Local Alignment Search Tool (BLAST) tool available from the Sol Genomics Network (SGN) (available at https://solgenomics.net/tools/blast/).
Notes
Files
Ant1_tomato_accessions.txt
Files
(271.0 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:88eb381d9c006393dd0baffa7968f06d
|
271.0 kB | Preview Download |
Additional details
References
- Hosmani, P. S., Flores-Gonzalez, M., van de Geest, H., Maumus, F., Bakker, L. V., Schijlen, E., ... & Saha, S. (2019). An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps. BioRxiv, 767764.
- 100 Tomato Genome Sequencing Consortium, Aflitos, S., Schijlen, E., de Jong, H., de Ridder, D., Smit, S., ... & Peters, S. (2014). Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole‐genome sequencing. The Plant Journal, 80(1), 136-148.