nipy/nipype: 1.7.0

Esteban, Oscar; Markiewicz, Christopher J.; Burns, Christopher; Goncalves, Mathias; Jarecka, Dorota; Ziegler, Erik; Berleant, Shoshana; Ellis, David Gage; Pinsard, Basile; Madison, Cindee; Waskom, Michael; Notter, Michael Philipp; Clark, Daniel; Manhães-Savio, Alexandre; Clark, Dav; Jordan, Kesshi; Dayan, Michael; Halchenko, Yaroslav O.; Loney, Fred; Salo, Taylor; Dewey, Blake E; Johnson, Hans; Bougacha, Salma; Keshavan, Anisha; Yvernault, Benjamin; Hamalainen, Carlo; Christian, Horea; Ćirić , Rastko; Dubois, Mathieu; Joseph, Michael; Cipollini, Ben; Tilley II, Steven; Visconti di Oleggio Castello, Matteo; De La Vega, Alejandro; Wong, Jason; Kaczmarzyk, Jakub; Huntenburg, Julia M.; Clark, Michael G.; Benderoff, Erin; Erickson, Drew; Kent, James D.; Hanke, Michael; Giavasis, Steven; Moloney, Brendan; Nichols, B. Nolan; Tungaraza, Rosalia; Frohlich, Caroline; Wassermann, Demian; de Hollander, Gilles; Dell'Orco, Andrea; Eshaghi, Arman; Millman, Jarrod; Mancini, Matteo; Close, Thomas; Nielson, Dylan M.; Varoquaux, Gael; Watanabe, Aimi; Mordom, David; Waller, Lea; Machado, Fátima; Guillon, Jérémy; Koudoro, Serge; Robert-Fitzgerald, Timothy; Chetverikov, Andrey; Rokem, Ariel; Acland, Benjamin; Forbes, Jessica; Markello, Ross; Gillman, Ashley; Kong, Xiang-Zhen; Geisler, Daniel; Salvatore, John; Gramfort, Alexandre; Doll, Anna; Buchanan, Colin; DuPre, Elizabeth; Liu, Siqi; Schaefer, Alexander; Kleesiek, Jens; Sikka, Sharad; Schwartz, Yannick; Ghayoor, Ali; Lee, John A.; Mattfeld, Aaron; Richie-Halford, Adam; Liem, Franz; Perez-Guevara, Martin Felipe; Heinsfeld, Anibal Sólon; Haselgrove, Christian; Durnez, Joke; Lampe, Leonie; Poldrack, Russell; Glatard, Tristan; Tabas, Alejandro; Cumba, Chad; Pérez-García, Fernando; Blair, Ross; Iqbal, Shariq; Baratz, Zvi; Welch, David; Contier, Oliver; Triplett, William; Craddock, R. Cameron; Correa, Carlos; Papadopoulos Orfanos, Dimitri; Stadler, Jörg; Warner, Joshua; Sisk, Lucinda M.; Falkiewicz, Marcel; Sharp, Paul; Rothmei, Simon; Kim, Sin; Weinstein, Alejandro; Kahn, Ari E.; Kastman, Erik; Bottenhorn, Katherine; Grignard, Martin; Perkins, L. Nathan; Zhou, Dale; Bielievtsov, Dmytro; Ben-Zvi, Gal; Cooper, Gavin; Stojic, Hrvoje; Linkersdörfer, Janosch; Renfro, Mandy; Hinds, Oliver; Stanley, Olivia; Küttner, René; Pauli, Wolfgang M.; Glen, Daniel; Kimbler, Adam; Meyers, Benjamin; Tarbert, Claire; Ginsburg, Daniel; Haehn, Daniel; Margulies, Daniel S.; Condamine, Eric; Ma, Feilong; Malone, Ian B.; Snoek, Lukas; Brett, Matthew; Cieslak, Matthew; Hallquist, Michael; Molina-Romero, Miguel; Bilgel, Murat; Lee, Nat; Jalan, Raunak; Inati, Souheil; Gerhard, Stephan; Mathotaarachchi, Sulantha; Saase, Victor; Van, Andrew; Steele, Christopher John; Ort, Eduard; Lerma-Usabiaga, Garikoitz; Schwabacher, Isaac; Arias, Jaime; Lai, Jeff; Pellman, John; Huguet, Jordi; Junhao WEN; Leinweber, Katrin; Chawla, Kshitij; Weninger, Leon; Modat, Marc; Harms, Robbert; Andberg, Sami Kristian; Matsubara, K; González Orozco, Abel A.; Routier, Alexandre; Marina, Ana; Davison, Andrew; Floren, Andrew; Park, Anne; Cheung, Brian; McDermottroe, Conor; McNamee, Daniel; Shachnev, Dmitry; Vogel, Dorian; Flandin, Guillaume; Jones, Henry; Gonzalez, Ivan; Varada, Jan; Schlamp, Kai; Podranski, Kornelius; Huang, Lijie; Noel, Maxime; Pannetier, Nicolas; Numssen, Ole; Khanuja, Ranjeet; Mukhometzianov, Rinat; Urchs, Sebastian; Nickson, Thomas; Huang, Lijie; Broderick, William; Xie, Xihe; Tambini, Arielle; Mihai, Paul Glad; Gorgolewski, Krzysztof J.; Ghosh, Satrajit

doi:10.5281/zenodo.5585697

Published October 20, 2021 | Version 1.7.0

Software Open

nipy/nipype: 1.7.0

1. Department of Psychology, Stanford University
2. Stanford University
3. MIT
4. Independent
5. The University of Iowa
6. The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland
7. Developer
8. Klinikum rechts der Isar, TUM. ACPySS
9. UC Berkeley
10. University of California, San Francisco
11. Mayo Clinic, Neurology, Rochester, MN, USA
12. Dartmouth College: Hanover, NH, United States
13. Florida International University
14. Department of Electrical and Computer Engineering, Johns Hopkins University
15. University of Iowa
16. Molecular Imaging Research Center, CEA, France
17. UC Berkeley - UCSF Graduate Program in Bioengineering
18. Institute for Biomedical Engineering, ETH and University of Zurich
19. The Centre for Addiction and Mental Health
20. UC San Diego
21. Holland Bloorview Kids Rehabilitation Hospital
22. Dartmouth College
23. University of Texas at Austin
24. Shattuck Lab, UCLA Brain Mapping Center
25. Research Group Neuroanatomy and Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
26. National Institutes of Health
27. Concordia University
28. Neuroscience Program, University of Iowa
29. Otto-von-Guericke-University Magdeburg, Germany
30. Child Mind Institute
31. SRI International
32. Athena EPI, Inria Sophia-Antipolis
33. Vrije Universiteit, Amsterdam
34. Charitè Universitätsmedizin Berlin, Germany
35. University College London
36. University of Sydney
37. National Institute of Mental Health
38. INRIA
39. Charite Universitatsmedizin Berlin, Germany
40. CIBIT, UC
41. ARAMIS LAB, Brain and Spine Institute (ICM), Paris, France.
42. Indiana University, IN, USA
43. Penn Statistics in Imaging and Visualization Endeavor, University of Pennsylvania
44. Donders Institute for Brain, Cognition and Behavior, Center for Cognitive Neuroimaging
45. The University of Washington eScience Institute
46. Washington University in St Louis
47. Montreal Neurological Institute and Hospital
48. Australian eHealth Research Centre, Commonwealth Scientific and Industrial Research Organisation; University of Queensland
49. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
50. Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany
51. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
52. Department of Psychology, University of Bielefeld, Bielefeld, Germany.
53. The University of Sydney
54. National University Singapore
55. UniversityHospital Heidelberg, Germany
56. Nathan s Kline institute for psychiatric research
57. NIMH IRP
58. University of Washington
59. University of Zurich
60. Neurospin/Unicog/Inserm/CEA
61. Department of Psychology, Stanford University; Parietal, INRIA
62. MPI CBS Leipzig, Germany
63. 1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montréal, 3801 University Street, WB-208, H3A 2B4, Québec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.
64. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.
65. Duke University
66. Sagol School of Neuroscience, Tel Aviv University
67. Max Planck Institute for Human Cognitive and Brain Sciences
68. CEA
69. Leibniz Institute for Neurobiology
70. Mayo Clinic
71. Yale University; New Haven, CT, United States
72. University of Illinois Urbana Champaign
73. Korea Advanced Institute of Science and Technology
74. University of Pennsylvania
75. Harvard University - Psychology
76. GIGA Institute
77. Boston University
78. University of Newcastle, Australia
79. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
80. German Institute for International Educational Research
81. Dept of Medical Biophysics, Univeristy of Western Ontario
82. California Institute of Technology
83. NIMH, Scientific and Statistical Computing Core
84. University of Pittsburgh
85. Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
86. CNRS, UMS3552 IRMaGe
87. University of Amsterdam
88. Department of Neuropsychiatry, University of Pennsylvania
89. Technical University Munich
90. National Institute on Aging, Baltimore, MD, USA
91. Institute of Neuroinformatics, ETH/University of Zurich
92. Enigma Biomedical Group
93. MPI-CBS; McGill University
94. Vrije Universiteit Amsterdam
95. Child Mind Institute / Nathan Kline Institute
96. BarcelonaBeta Brain Research Center
97. TIB – Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany
98. INRIA-Saclay, Team Parietal
99. Institute of Imaging & Computer Vision, RWTH Aachen University, Germany
100. University of Helsinki
101. Universidad de Guadalajara
102. ARAMIS Lab
103. The University of Texas at Austin
104. University of Cambridge
105. University of Applied Sciences and Arts Northwestern Switzerland
106. Stanford University and the University of Chicago
107. Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
108. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
109. Medical Imaging & Biomarkers, Bioclinica, Newark, CA, USA.
110. University of Waterloo
111. Weill Cornell Medicine
112. MIT, HMS

1.7.0 (October 20, 2021)

New feature release in the 1.7.x series.

(Full changelog

FIX: Make ants.LaplacianThickness output_image a string, not file (https://github.com/nipy/nipype/pull/3393)
FIX: coord for mrconvert (https://github.com/nipy/nipype/pull/3369)
FIX: antsRegistration allows the restrict_deformation to be float (https://github.com/nipy/nipype/pull/3387)
FIX: Also allow errno.EBUSY during emptydirs on NFS (https://github.com/nipy/nipype/pull/3357)
FIX: Removed exists=True from MathsOutput (https://github.com/nipy/nipype/pull/3385)
FIX: Extension not extensions, after pybids v0.9 (https://github.com/nipy/nipype/pull/3380)
ENH: Add CAT12 SANLM denoising filter (https://github.com/nipy/nipype/pull/3374)
ENH: Add expected steps for FreeSurfer 7 recon-all (https://github.com/nipy/nipype/pull/3389)
ENH: Stop printing false positive differences when logging cached nodes (https://github.com/nipy/nipype/pull/3376)
ENH: Add new flags to MRtrix/preprocess.py (DWI2Tensor, MRtransform) (https://github.com/nipy/nipype/pull/3365)
ENH: verbose input should not be hashed in ants.Registration (https://github.com/nipy/nipype/pull/3377)
REF: Clean-up the BaseInterface run() function using context (https://github.com/nipy/nipype/pull/3347)
DOC: Fix typo in README (https://github.com/nipy/nipype/pull/3386)
STY: Make private member name consistent with the rest of them (https://github.com/nipy/nipype/pull/3346)
MNT: Simplify interface execution and better error handling of Node (https://github.com/nipy/nipype/pull/3349)
MNT: Add user name and email to Docker to appease git/annex/datalad (https://github.com/nipy/nipype/pull/3378)
CI: Update CircleCI machine image (https://github.com/nipy/nipype/pull/3391)

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nipy/nipype: 1.7.0

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