Dataset Open Access

LMAS Test Dataset

Mendes, CI

Project leader(s)
Ramirez, M
Project member(s)
Vila-Cerqueira, P; Motro, Y; Moran-Gilad, J; Carriço, JA

LMAS is an automated workflow enabling the benchmarking of traditional and metagenomic prokaryotic de novo assembly software using defined mock communities.

As proof of concept, the eight bacterial genomes and four plasmids, in tripled form, of the ZymoBIOMICS Microbial Community Standards are made available to be used as reference. Simulated raw sequence data of the mock communities with evenly distributed reads, generated from the reference genomes, with and without error, were obtained with inSilicoSeq.

Project repository: https://github.com/cimendes/LMAS

 

Files (13.1 GB)
Name Size
about.md
md5:c91a5bc26e77af63220d6cf5fe850d46
1.6 kB Download
EMS_1.fq.gz
md5:4f387f8f62335d994fe980f6485c8933
957.8 MB Download
EMS_2.fq.gz
md5:b514ce263de67f505d789bda290c3347
1.0 GB Download
ENN_1.fq.gz
md5:91c985363fbdab1affcdb510dd18ff9e
386.3 MB Download
ENN_2.fq.gz
md5:0ca5708cd81d4fac2a325f69ac135a19
386.3 MB Download
LHS_1.fq.gz
md5:3941794f219a98176c6a87ce41f7b94e
3.0 GB Download
LHS_2.fq.gz
md5:ea0c039c53569548c7558c73abf887c7
3.1 GB Download
LNN_1.fq.gz
md5:e94c265abe1d203cf8421af5f7b8fc73
2.1 GB Download
LNN_2.fq.gz
md5:38ee87f29d67a92f5ba3eaaf21bda70a
2.1 GB Download
ZymoBIOMICS_genomes.fasta
md5:210ce1e0659322ce241bba8ea41cb38c
30.9 MB Download
214
201
views
downloads
All versions This version
Views 214102
Downloads 20195
Data volume 185.1 GB106.6 GB
Unique views 18189
Unique downloads 8837

Share

Cite as