Published October 13, 2021 | Version 1.0.7
Dataset Open

Example input for MAPP workflow

Authors/Creators

  • 1. Biozentrum, Universitat Basel; Swiss Institute of Bioinformatics

Description

Small test dataset for MAPP workflow:

  • 5mln reads sampled from two paired-end RNA-seq samples of the GEO record: GSE69656
  • 100 arbitrarily chosen Position Weight Matrices for RNA binding proteins and their sequence logos
  • configuration template for the workflow (YAML)
  • experiment design table (TSV)
  • Genomic annotation for human: chr21 (GTF)
  • Genomic sequence for human: chr21 (FASTA)
  • PolyAsite Atlas 2.0 annotation: chr21 (BED)

Files

Files (1.7 GB)

Name Size
md5:cedcd5812bef09e1db55c21c052eea98
1.7 GB Download

Additional details

Related works

Is compiled by
Other: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69656 (URL)

References