Reestablishment of genera in Maleae (Rosaceae) based on chloroplast genome analysis

The Supplementary figures and tables of Article 'Reestablishment of genera in Maleae (Rosaceae) based on chloroplast genome analysis'.

Table S1.  Thirty-six generally accepted genera in Maleae.

Table S2.  Taxa of chloroplast genomes downloaded from the GenBank and used in phylogenetic analysis.

Table S3.  Primers used to amplify the chloroplast genomes of Rosaceae.

Table S4.  Variability of 162 regions of 59 chloroplast genomes of species in the core Maleae.

Fig. S1.  Chloroplast genome map of Crataegus kansuensis. Genes inside and outside the circle are transcribed clockwise and counterclockwise, respectively. Genes of different functional groups are shown in different colors. Thick lines indicate the extent of inverted repeats (IRa and IRb) that separate the genomes into small single copy (SSC) and large single copy (LSC) regions. 

Fig. S2.  Maximum parsimonious tree of 88 chloroplast genomes, showing the phylogenetic relationships within the Rosaceae and the systematic position of Maleae. The tree was rooted using Dryadoideae as an outgroup. Bootstrap support is 100% unless otherwise indicated.

Fig. S3.  Maximum likelihood tree of 65 chloroplast genomes, showing the phylogenetic relationships within the Maleae. The tree was rooted using Gillenia genome as an outgroup. 

Fig. S4.  Maximum parsimonious tree of 65 chloroplast genomes, showing the phylogenetic relationships within the Maleae. The tree was rooted using Gillenia genome as an outgroup.