New methods for robust continuous wave T1ρ relaxation preparation

This dataset contains all the raw source data, MATLAB analysis functions and files, and article figures that comprise the study:

New methods for robust continuous wave T1ρ relaxation preparation

NMR in Biomedicine, 2022. 

Pala S(1), Hänninen NE(1,2), Nykänen O(1), Liimatainen T(2,3), Nissi MJ(1,2)*

(1) Department of Applied Physics, University of Eastern Finland, POB 1627, FI-70211 Kuopio, Finland
(2) Research Unit of Medical Imaging, Physics and Technology, University of Oulu, POB 5000, FI-90014 Oulu, Finland
(3) Department of Radiology, Oulu University Hospital, Oulu, Finland

*Corresponding author:
Mikko J. Nissi
Department of Applied Physics,
University of Eastern Finland
POB 1627
FI-70211, Kuopio, Finland
mikko.nissi@uef.fi
+358-50-5955517

Keywords: contrast, T1ρ relaxation, field inhomogeneity, rotating frame of reference, bloch simulation. 

Included folders and files are:
- article_figures: all figures published in the manuscript and in the supplementary document (.svg format)
- experimental Data: .fid files of the MRI measurements ordered, the script for comparison of methods and supporting files (ROIs and masks), and corresponding mono-exponential fitted T1 rho maps.
- macro_files: VnmrJ macro files for setting up the measurements using all the pulse schemes discussed in the manuscript and supplementary documents.
- RF_Pulse_sequences: VnmrJ RF waveforms used in the study, generated using the included Matlab functions
- matlab_functions: Matlab functions used for creating the RF waveforms (T1rho pulse schemes) and for data analysis with subfolders and files:
    - aedes_plugins: plugins for aedes (http://aedes.uef.fi) and scripts to read all raw data files for calculation of relaxation time maps     - miscellaneous_functions: Pulse generation functions and other functions (Pulse generation, sequence reading and display,                and pulse simulation scripts) and also scripts for RMS calculation.
    - PulseTrain_Generator.m: GUI tool for using the various included scripts for creating the RF waveforms used in the study
- README.txt: this file describing the contents of the dataset

See more info in separate readme files included in sub-folders.