Published September 30, 2021 | Version v2.10.0
Software Open

OpenFlexure Microscope Software Stack

Authors/Creators

  • 1. University of Bath

Description

Software to run an OpenFlexure Microscope. This consists of a Python server, a web application client, a Python client, an Electron application acting as host for the web application, and a pre-built SD card image for the Raspberry Pi. These are developed in a number of separate GitLab and GitHub repositories, but are archived here in support of a paper describing the OpenFlexure Software Stack.

See the "related/alternate identifiers" section for links to the live repositories.

Files

2020-12-15-raspbian-openflexure-buster-armhf-full.zip

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Additional details

Compiles
Software: https://pypi.org/project/openflexure-microscope-client/ (URL)
Software: https://pypi.org/project/labthings/ (URL)
Has part
Software: https://gitlab.com/openflexure/openflexure-microscope-server (URL)
Software: https://gitlab.com/openflexure/openflexure-microscope-pyclient (URL)
Software: https://gitlab.com/openflexure/openflexure-connect (URL)
Software: https://gitlab.com/openflexure/pi-gen (URL)
Software: https://github.com/labthings/python-labthings (URL)
Is documented by
Software documentation: https://python-labthings.readthedocs.io/en/latest/ (URL)
Software documentation: https://openflexure-microscope-software.readthedocs.io/ (URL)
Is published in
Journal article: 10.1098/rsos.211158 (DOI)

Funding

UK Research and Innovation
Parallelised live microscopy for high-throughput behavioural phenotyping in malaria research EP/R011443/1
UK Research and Innovation
Detailed malaria diagnostics with intelligent microscopy EP/R013969/1