Published September 30, 2021
| Version v1
Journal article
Restricted
Toward a revision of the bamboo corals: Part 3, deconstructing the Family Isididae
Authors/Creators
- 1. Faculty of Science, Brigham Young University - Hawaii, 55-220 Kulanui St, Laie, Hawaii, 96762, USA
- 2. Department of Biology, University of Louisiana at Lafayette, Lafayette, Louisiana, USA
- 3. School of Life Sciences, University of Hawaii at Manoa, Honolulu, Hawaii 96822
Description
Saucier, Esprit Heestand, France, Scott C., Watling, Les (2021): Toward a revision of the bamboo corals: Part 3, deconstructing the Family Isididae. Zootaxa 5047 (3): 247-272, DOI: 10.11646/zootaxa.5047.3.2
Files
Restricted
The record is publicly accessible, but files are restricted. Log in to check if you have access.
Linked records
Additional details
References
- Alderslade, P. (1986) New species of the gorgonian genus Plumigorgia (Coelenterata: Octocorallia) with a review of the family Ifalukellidae. The Beagle, Occasional Papers of the Northern Territory Museum of Arts and Sciences, 3, 95-122. https://doi.org/10.5962/p.260877
- Alderslade, P. (1998) Revisionary systematics in the gorgonian family Isididae, with descriptions of numerous taxa (Coelenterata: Octocorallia). Records of the Western Australian Museum, Supplement, 55, 1-359.
- Alderslade, P. (2006) New subfamilies and a new genus and species of Melithaeidae (Coelenterata: Octocorallia: Alcyonacea) with comparative data on the structure of both melithaeid and suberogorgiid axes. Zootaxa, 1199 (1), 1-47. https://doi.org/10.11646/zootaxa.1199.1.2
- Alderslade, P. & McFadden, C.S. (2012) A new genus and species of the family Isididae (Coelenterata: Octocorallia) from a CMAR Biodiversity study, and a discussion on the subfamilial placement of some nominal isidid genera. Zootaxa, 3154 (1), 21-39. https://doi.org/10.11646/zootaxa.3154.1.2
- Apakupakul, K., Siddall, M.E. & Burreson, E.M. (1999) Higher level relationships of leeches (Annelida: Clitellata: Euhirudinea) based on morphology and gene sequences. Molecular phylogenetics and evolution, 12, 350-359. https://doi.org/10.1006/mpev.1999.0639
- Bayer, F.M. (1955) Contributions to the nomenclature, systematics, and morphology of the Octocorallia. Proceedings of the United States National Museum, 105, 207-220. https://doi.org/10.5479/si.00963801.105-3357.207
- Bayer, F.M. (1956) Octocorallia. In: Moore, R.C. (E d.), T reatise on Invertebrate Paleontology. Part F. Coelenterata. Geo- logical Society of America and University of Kansas Press, Lawrence, Kansas, pp. 166-231.
- Bayer, F.M. (1988) Mirostenella articulata, a remarkable new genus and species of primnoid octocoral (Gorgonacea) with uncalcified axial nodes. Proceedings of the Biological Society of Washington, 101, 251-256.
- Bayer, F.M. (1990) A new isidid octocoral (Anthozoa: Gorgonacea) from New Caledonia, with descriptions of other new species from elsewhere in the Pacific Ocean. Proceedings of the Biological Society of Washington, 103, 205-228.
- Bayer, F.M. & Stefani, J. (1987a) New and previously known taxa of isidid octocorals (Coelenterata: Gorgonacea), partly from Antarctic waters. Proceedings of the Biological Society of Washington, 100, 937-991.
- Bayer, F.M. & Stefani, J. (1987b) Isididae (Gorgonacea) de Nouvelle-Caledonie: nouvelles cle des genres de la famille. Bulletin du Museum national d'histoire naturelle, 4e Series, Section A, 9, 47-106.
- Bayer, F.M. & Stefani, J. (1988) Primnoidae (Gorgonacea) de Nouvelle-Caledonie. Bulletin du Museum national d'histoire Naturelle, 4e Series, Section A, 10, 449-518.
- Bilewitch, J.P. & Degnan, S.M. (2011) A unique horizontal gene transfer event has provided the octocoral mitochondrial genome with an active mismatch repair gene that has potential for an unusual self-contained function. BMC Evolutionary Biology, 11, 228. https://doi.org/10.1186/1471-2148-11-228
- Bouchet, P., Heros, V., Lozouet, P. & Maestrati, P. (2008) A quarter-century of deep-sea malacological exploration in the South and West Pacific: where do we stand? how far to go? Tropical Deep-Sea Benthos, 25, 9-40.
- Brockman, S.A. & McFadden, C.S. (2012) The mitochondrial genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) supports intramolecular recombination as the primary mechanism of gene rearrangement in octocoral mitochondrial genomes. Genome biology and evolution, 4, 994-1006. https://doi.org/10.1093/gbe/evs074
- Brugler, M.R. & France, S.C. (2008) The mitochondrial genome of a deep-sea bamboo coral (Cnidaria, Anthozoa, Octocorallia, Isididae): genome structure and putative origins of replication are not conserved among octocorals. Journal of Molecular Evolution, 67, 125-136. https://doi.org/10.1007/s00239-008-9116-2
- Duenas, L. & Sanchez, J.A. (2009) Character liability in deep-sea bamboo corals (Octocorallia, Isididae, Keratoisididae) Marine Ecology Progress Series, 307, 11-23. https://doi.org/10.3354/meps08307
- Duenas, L., Alderslade, P. & Sanchez, J.A. (2014) Molecular systematics of the deep-sea bamboo corals (Octocorallia: Isididae: Keratoisidinae) from New Zealand with descriptions of two new species of Keratoisis. Molecular Phylogenetics and Evolution, 74, 15-28. https://doi.org/10.1016/j.ympev.2014.01.031
- Etnoyer, P.J. (2008) A new species of Isidella bamboo coral (Octocorallia: Alcyonacea: Isididae) from northeast Pacific seamounts. Proceedings of the Biological Society of Washington, 121, 541-553. https://doi.org/10.2988/08-16.1
- Fabricius, K. & Alderslade, P. (2001) Soft corals and sea fans. Australian Institute of Marine Sciences, and the Museum and Art Gallery of the Northern Territory, Queensland, 264 pp. [ISBN 0642322104]
- Farris, J.S., Kallersjo, M., Kluge, A.G. & Bult, C. (1994) Testing significance of incongruence. Cladistics, 10, 315-319. https://doi.org/10.1111/j.1096-0031.1994.tb00181.x
- Figueroa, D.F. & Baco, A.R. (2015) Octocoral mitochondrial genomes provide insights into the phylogenetic history of gene order rearrangements, order reversals, and cnidarian phylogenetics. Genome Biology and Evolution, 7, 391-409. https://doi.org/10.1093/gbe/evu286
- France, S.C. (2007) Genetic analysis of bamboo corals (Cnidaria: Octocorallia: Isididae): does lack of colony branching distinguish Lepidisis from Keratoisis? Bulletin of Marine Science, 81, 323-333.
- France, S.C. & Hoover, L.L. (2002) DNA sequences of the mitochondrial COI gene have low levels of divergence among deepsea octocorals (Cnidaria: Anthozoa). Hydrobiologia, 471, 149-155. https://doi.org/10.1023/A:1016517724749
- Grant, R.B. (1976) The marine fauna of New Zealand: Isididae (Octocorallia: Gorgonacea) from New Zealand and the Antarctic. Memoirs of the New Zealand Oceanographic Institute, Wellington, 66, 1-56.
- Grasshoff, M. & Bargibant, G. (2001) Coral Reef Gorgonians of New Caledonia. 3rd Edition. Institut de Recherche Por le Developpement, Paris, 335 pp. [ISSN: 1286-4994]
- Gray, J.E. (1858) Synopsis of the families and genera of axiferous zoophytes or barked corals. Proceedings of the Zoological Society of London for 1857, 1858, 278-294. https://doi.org/10.1111/j.1096-3642.1857.tb01242.x
- Gray, J.E. (1870) Catalogue of the lithophytes or stony corals in the collection of the British Museum. British Museum, London, vi + 51 pp. https://doi.org/10.5962/bhl.title.11307
- Heestand Saucier, E. (2016) Phylogenetic studies of the deep-sea bamboo corals (Octocorallia: Isididae: Keratoisidinae). PhD Dissertation, University of Louisiana, Lafayette, Louisiana, 410 pp.
- Hickson, S.J. (1907) Coelenterata. I. -Alcyonaria. Report of the Scientific Investigations of the National Antarctic Expedition, 1901-1904. British Museum (Natural History), London, England, 3, 1-15.
- Hogan, R.I., Hopkins, K., Wheeler, A.J., Allcock, A.L. & Yesson, C. (2019) Novel diversity in mitochondrial genomes of deepsea Pennatulacea (Cnidaria: Anthozoa: Octocorallia). Mitochondrial DNA Part A, 30, 764-777. https://doi.org/10.1080/24701394.2019.1634699
- Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research, 30, 3059-3066. https://doi.org/10.1093/nar/gkf436
- Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution, 30, 772-780. https://doi.org/10.1093/molbev/mst010
- Kolliker, R.A. von (1865) s.n. In: Icones histologicae. Oder Atlas der vergleichenden Gewebelehre. Zweite Abtheilung. Der feinere Bau der Hoheren Thiere. Erste Heft. Die Bindesubstanz der Coelenteraten. Verlag von Wilhelm Bngelmann, Leipzig, pp. i-iv + 87-181. https://doi.org/10.5962/bhl.title.11946
- Kukenthal, W. (1915) System und Stammesgeschichte der Isididae. Zoologischer Anzeiger, 46, 116-126.
- Kukenthal, W. (1919) Gorgonaria. Wissenchaftliche Ergebnisse der Deutschen Tiefsee-Expedition auf dem Dampfer "Valdivia" 1898-1899, 13, 1-946.
- Kukenthal, W. (1924) Gorgonaria. In: Das Tierreich. Vol. 47. Walter de Gruyter and Co, Berlin and Leipzig, pp. 1-478.
- Lamarck, J.B.D. (1816) Histoire naturelle des Animaux sans Vertebres, presentant les caracteres generaux et particuliers de ces animaux, leur distribution, leurs classes, leurs familles, leurs genres, et la citation des principales especes qui s'y rapportent; precedee d'une Introduction offrant la Determination des caracteres essentiels de l'Animal, sa distinction du Vegetal et des autres corps naturels, enfin, l'exposition des principes fondamentaux de la Zoologie. Deterville and Verdiere, Paris, 462 pp. https://doi.org/10.5962/bhl.title.40014
- Lamouroux, J.V.F. (1812) Extrait d'un memoire sur la classification des Polypiers coralligenes non entierement pierreux. Nouveau Bulletin des Sciences, par la Societe Philomatique, Paris, 3, 181-188.
- Lamouroux, J.V.F. (1816) Histoire des Polypiers coralligenes flexibles, vulgairement nommes Zoophytes. F. Poisson, Caen, lxxxiv + 560 pp. https://doi.org/10.5962/bhl.title.11172
- Lapointe, A. & Watling, L. (2015) Bamboo corals from the abyssal Pacific: Bathygorgia. Proceedings of the Biological Society of Washington, 128, 125-136. https://doi.org/10.2988/0006-324X-128.2.125
- McFadden, C.S., Benayahu, Y., Pante, E., Thoma, J.N., Nevarez, P.A. & France, S.C. (2011) Limitations of mitochondrial gene barcoding in Octocorallia. Molecular Ecology Resources, 11, 19-31. https://doi.org/10.1111/j.1755-0998.2010.02875.x
- McFadden, C.S., France, S.C., Sanchez, J.A. & Alderslade, P. (2006) A molecular phylogenetic analysis of the Octocorallia (Cnidaria: Anthozoa) based on mitochondrial protein-coding sequences. Molecular Phylogenetics and Evolution, 41, 513-527. https://doi.org/10.1016/j.ympev.2006.06.010
- McFadden C.S. & van Ofwegen, L.P. (2012) Stoloniferous octocorals (Anthozoa, Octocorallia) from South Africa, with descriptions of a new family of Alcyonacea, a new genus of Clavulariidae, and a new species of Cornularia (Cornulariidae). Invertebrate Systematics, 26, 331-356. https://doi.org/10.1071/IS12035
- McFadden, C.S., Quattrini, A.M., Brugler, M.R., Cowman, P.F., Duenas, L.F., Kitahara, M.V., Paz-Garcia, D.A., Reimer, J.D. & Rodriguez, E. (2021) Phylogenomics, origin, and diversification of anthozoans (Phylum Cnidaria). Systematic Biology, 70, 635-647. https://doi.org/10.1093/sysbio/syaa103
- Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway computing environments Workshop, New Orleans, Louisiana, 2010, 1-8. https://doi.org/10.1109/GCE.2010.5676129
- Milne Edwards, H. & Haime, J. (1857) Histoire Naturelle des coralliaires ou Polypes proprement dits. Vol. 1. Librairie Encyclopedique de Roret, Paris, 326 pp. https://doi.org/10.5962/bhl.title.11574
- Moore, K., Alderslade, P. & Miller, K. (2016) A taxonomic revision of the genus Primnoisis Studer [& Wright], 1887 (Coelenterata: Octocorallia: Isididae) using morphological and molecular data. Zootaxa, 4075 (1), 1-141. https://doi.org/10.11646/zootaxa.4075.1.1
- Pante, E., France, S.C., Couloux, A., Cruaud, C., McFadden, C.S., Samadi, S., & Watling, L. (2012) Deep-sea origins and in-situ diversification of chrysogorgiid octocorals. PLoS ONE, 7, e38357. https://doi.org/10.1371/journal.pone.0038357
- Pante, E., Heestand Saucier, E., & France, S.C. (2013) Molecular and morphological data support reclassification of the octocoral genus Isidoides. Invertebrate Systematics, 27, 365-378. https://doi.org/10.1071/IS12053
- Quattrini, A.M., Rodriguez, E., Faircloth, B.C., Cowman, P.F., Brugler, M.R., Farfan, G.A., Hellberg, M.E., Kitahara, M.V., Morrison, C.L., Paz-Garcia, D.A. & Reimer, J.D. (2020) Palaeoclimate ocean conditions shaped the evolution of corals and their skeletons through deep time. Nature Ecology & Evolution, 4, 1531-1538. https://doi.org/10.1038/s41559-020-01291-1
- Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetics inference under mixed models. Bioinformatics, 19, 1572-1574. https://doi.org/10.1093/bioinformatics/btg180
- Rowley, S.J., Pochon, X. & Watling, L. (2015) Environmental influences on the Indo-Pacific octocoral Isis hippuris Linnaeus 1758 (Alcyonacea: Isididae): genetic fixation or phenotypic plasticity? PeerJ, 3, e1128. https://doi.org/10.7717/peerj.1128
- Studer, T. (1878) Ubersicht der Anthozoa Alcyonaria, welche wahrend der Reise S.M.S. Gazelle umdie Erde gesammelt wurden. Monatsberichte. Konigliche Preussiche Akademie der Wissenschaften, Berlin, 1878, 632-688.
- Studer, T. & Wright, E.P. (1887) Versuch eines Systemes der Alcyonaria. Archiv fur Naturgeschichte, 53, 1-74.
- van der Ham, J.L., Brugler, M.R. & France, S.C. (2009) Exploring the utility of an indel-rich, mitochondrial intergenic region as a molecular barcode for bamboo corals (Octocorallia: Isididae). Marine Genomics, 2, 183-192. https://doi.org/10.1016/j.margen.2009.10.002
- Verrill, A.E. (1883). Report on the Anthozoa, and on some additional species dredged by the "Blake" in 1877-1879, and by the U.S. Fish Commission steamer "Fish Hawk" in 1880-82. Bulletin of the Museum of Comparative Zoology, 11, 1-72.
- Vielzeuf, D., Garrabou, J., Baronnet, A., Grauby, O. & Marschal, C. (2008). Nano to macroscale biomineral architecture of red coral (Corallium rubrum). American Mineralogist, 93, 1799-1815. https://doi.org/10.2138/am.2008.2923
- Watling, L. (2015) A new genus of bamboo coral (Octocorallia: Isididae) from the Bahamas. Zootaxa, 3918 (2), 239-249. https://doi.org/10.11646/zootaxa.3918.2.5
- Watling, L. (2020) Toward a revision of the bamboo corals: Part 1, species in the Muricellisidinae (Octocorallia: Isididae). Zootaxa, 4881 (2), 361-371. https://doi.org/10.11646/zootaxa.4881.2.9
- Watling, L. & France, S.C. (2011) A new genus and species of bamboo coral (Octocorallia: Isididae: Keratoisidinae) from the New England Seamounts. Bulletin of the Peabody Museum of Natural History, 52, 209-220. https://doi.org/10.3374/014.052.0202
- Watling, L. & France, S.C. (2021) Toward a revision of the bamboo corals: Part 2, untangling the genus Lepidisis (Octocorallia: Isididae). Bulletin of the Peabody Museum of Natural History. [in press]
- Williams G.C. & Cairns, S.D. (2019) "Systematic List of Valid Octocoral Genera." Octocoral Research Center. California Academy of Sciences. Copyright 2001-2019. Available from: http://researcharchive.calacademy.org/research/izg/OCTO- CLASS.htm (accessed 26 April 2021)
- Wright, E.P. (1869) On a new Genus of Gorgonidae from Portugal. Annals and Magazine of Natural History, 4, 23-26. https://doi.org/10.1080/00222936908695873
- Wright, E.P. & Studer, T. (1889) Report on the Alcyonaria collected by H.M.S. Challenger during the years 1873-1876. Report on the Scientific Results of the Voyage of H.M.S. Challenger during the Years 1873-76. Zoology, 31, i-lxxvii + 1-314.
- Zapata-Guardiola, R., Lopez-Gonzalez, P. J. & Gili, J. M. (2012) A review of the genus Mirostenella Bayer, 1988 (Octocorallia: Primnoidae) with a description of a new subgenus and species. Helgoland Marine Research, 67, 229-240. https://doi.org/10.1007/s10152-012-0318-z