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Published September 28, 2021 | Version v1
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A new species of the sun coral genus Tubastraea (Scleractinia: Dendrophylliidae) from Hong Kong

Authors/Creators

  • 1. Department of Biology and Hong Kong Branch of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Hong Kong Baptist University, Hong Kong, China & 20482205@life.hkbu.edu.hk; https://orcid.org/0000-0001-6212-7339
  • 2. Department of Biology and Hong Kong Branch of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Hong Kong Baptist University, Hong Kong, China & sheena98@connect.hku.hk; https://orcid.org/0000-0002-4575-4311
  • 3. Department of Biology and Hong Kong Branch of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Hong Kong Baptist University, Hong Kong, China & Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China & HKBU Institute of Research and Continuing Education, Virtual University Park, Shenzhen, China & qiujw@hkbu.edu.hk; https://orcid.org/0000-0002-1541-9627

Description

Yiu, Sam King Fung, Chung, Sheena Suet-Wah, Qiu, Jian-Wen (2021): A new species of the sun coral genus Tubastraea (Scleractinia: Dendrophylliidae) from Hong Kong. Zootaxa 5047 (1): 1-16, DOI: 10.11646/zootaxa.5047.1.1

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Cites
Publication: 10.1111/zsc.12072 (DOI)
Publication: 10.1089/cmb.2012.0021 (DOI)
Publication: 10.1093/bioinformatics/btu170 (DOI)
Publication: 10.5479/si.00810282.504 (DOI)
Publication: 10.5479/si.00810282.557.i (DOI)
Publication: 10.5479/si.00810282.615 (DOI)
Publication: 10.3897/zookeys.227.3612 (DOI)
Publication: 10.7717/peerj.8633 (DOI)
Publication: 10.1093/nar/gkh340 (DOI)
Publication: 10.1098/rspb.2006.3685 (DOI)
Publication: 10.1016/j.ympev.2019.106698 (DOI)
Publication: 10.1163/18759866-0740102009 (DOI)
Publication: 10.1163/18759866-08201001 (DOI)
Publication: 10.5134/175544 (DOI)
Publication: 10.1093/molbev/msx281 (DOI)
Publication: 10.1080/10635150490522629 (DOI)
Publication: 10.1038/nmeth.4285 (DOI)
Publication: 10.1371/journal.pone.0011490 (DOI)
Publication: 10.1016/j.cageo.2005.11.009 (DOI)
Publication: 10.1093/molbev/msy096 (DOI)
Publication: 10.1080/00222930701862724 (DOI)
Publication: 10.1093/molbev/msu300 (DOI)
Publication: 10.1093/bioinformatics/bts091 (DOI)
Publication: 10.1093/bioinformatics/bty633 (DOI)
Publication: 10.1093/bioinformatics/btg180 (DOI)
Publication: 10.1111/j.1471-8286.2007.01996.x (DOI)
Publication: 10.1111/j.1469-185x.2008.00045.x (DOI)
Publication: 10.1111/j.1096-0031.2010.00329.x (DOI)
Publication: 10.1007/978-3-319-24277-4_9 (DOI)
Publication: 10.1016/j.dsr.2019.03.001 (DOI)
Publication: 10.1016/j.marpolbul.2021.112289 (DOI)
Publication: 10.1111/2041-210X.12628 (DOI)
Has part
Taxonomic treatment: 10.5281/zenodo.5533629 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/7D5BA03CFFC49049FF5CFB685767FA7D (URL)
Taxonomic treatment: http://treatment.plazi.org/id/7D5BA03CFFC49043FF5CF9AC5199FE11 (URL)
Taxonomic treatment: 10.5281/zenodo.5533637 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/7D5BA03CFFCF9042FF5CFA3350FEF819 (URL)
Figure: 10.5281/zenodo.5533631 (DOI)
Figure: 10.5281/zenodo.5533633 (DOI)
Figure: 10.5281/zenodo.5533635 (DOI)

References

  • Arrigoni, R., Kitano, Y.F., Stolarski, J., Hoeksema, B.W., Fukami, H., Stefani, F., Galli, P., Montano, S., Castoldi, E. & Benzoni, F. (2014) A phylogeny reconstruction of Dendrophylliidae (Cnidaria, Scleractinia) based on molecular and micromorphological criteria, and its ecological implications. Zoologica Scripta, 43, 661-688. https://doi.org/10.1111/zsc.12072
  • Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., Lesin, V.M., Nikolenko, S.I., Pham, S., Prjibelski, A.D., Pyshkin, A.V., Sirotkin, A.V., Vyahhi, N., Tesler, G., Alekseyev, M.A. & Pevzner, P.A. (2012) SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing. Journal of Computational Biology, 19, 455-477. https://doi.org/10.1089/cmb.2012.0021
  • Bolger, A.M., Lohse, M. & Usadel, B. (2014) Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics, 30, 2114-2120. https://doi.org/10.1093/bioinformatics/btu170
  • Cairns, S.D. (1991) A revision of the ahermatypic Scleractinia of the Galapagos and Cocos Islands. Smithsonian Contributions to Zoology, 504, 1-44. https://doi.org/10.5479/si.00810282.504
  • Cairns, S.D. (1994) Scleractinia of the Temperate North Pacific. Smithsonian Contributions to Zoology, 557, 1-150. https://doi.org/10.5479/si.00810282.557.i
  • Cairns, S.D. (2001) A generic revision and phylogenetic analysis of the Dendrophylliidae (Cnidaria: Scleractinia). Smithsonian Contributions to Zoology, 615, 1-75. https://doi.org/10.5479/si.00810282.615
  • Cairns, S.D. & Kitahara, M.V. (2012) An illustrated key to the genera and subgenera of the recent azooxanthellate Scleractinia (Cnidaria, Anthozoa), with an attached glossary. ZooKeys, 227, 1-47. https://doi.org/10.3897/zookeys.227.3612
  • Cairns, S.D. & Zibrowius, H. (1997) Cnidaria Anthozoa: azooxanthellate Scleractinia from the Philippine and Indonesian regions. Memoires du Museum National d'Histoire Naturelle, 172, 27-243.
  • Capel, K.C.C., Lopez, C., Molto-Martin, I., Zilberberg, C., Creed, J.C., Knapp, I.S.S., Hernandez, M., Forsman, Z.H., Toonen, R.J. & Kitahara, M.V. (2020) Atlantia, a new genus of Dendrophylliidae (Cnidaria, Anthozoa, Sclerctinia) from the eastern Atlantic. PeerJ, 8, e8633. https://doi.org/10.7717/peerj.8633
  • Chan, A.L.K., Chan, K.K., Choi, C.L.S., McCorry, D., Lee, M.W. & Ang, P.J. (2005) Field guide to hard corals of Hong Kong. Friends of the Country Parks, Hong Kong, 373 pp.
  • Edmondson, C.H. (1933) Reef and shore fauna of Hawaii. Bishop Museum Press, Hawaii, 381 pp.
  • Edgar, R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792-1797. https://doi.org/10.1093/nar/gkh340
  • Faucci, A., Toonen, R.J. & Hadfield, M.G.A. (2007) Host shift and speciation in a coral feeding nudibranch. Proceedings of the Royal Society B: Biological Sciences, 274, 111-119. https://doi.org/10.1098/rspb.2006.3685
  • Fritts-Penniman, A.L., Gosliner, T.M., Mahardika, G.N. & Barber, P.H. (2020) Cryptic ecological and geographic diversification in coral-associated nudibranchs. Molecular Phylogenetics and Evolution, 144, 106698. https://doi.org/10.1016/j.ympev.2019.106698
  • Gittenberger, A., Gittenberger, E. (2005) A hitherto unnoticed adaptive radiation: epitoniid species (Gastropoda: Epitoniidae) associated with corals (Scleractinia). Contributions to Zoology, 74, 125-203. https://doi.org/10.1163/18759866-0740102009
  • Gittenberger, A. & Hoeksema, B.W. (2013) Habitat preferences of coral-associated wentletrap snails (Gastropoda: Epitoniidae). Contributions to Zoology, 82, 1-25. https://doi.org/10.1163/18759866-08201001
  • Harris, L.G. (1968) Notes on the biology and distribution of the aeolid nudibranch (Gastropoda), Phestilla melanobrachia Bergh, 1874. Publications of the Seto Marine Biological Laboratory, 16, 193-198. https://doi.org/10.5134/175544
  • Hoang, D.T., Chernomor, O., von Haeseler, A., Minh, B.Q. & Vinh, L.S. (2017) UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution, 35, 518-522. https://doi.org/10.1093/molbev/msx281
  • Hoeksema, B.W. & Cairns S (2020) World List of Scleractinia, Dendrophylliidae Gray, 1847. Available from: http://www.marinespecies.org/aphia.php?p=taxdetails&id=135074 (accessed 12 December 2020)
  • Hu, J., Zhang, Y., Xie, J.Y. & Qiu, J.W. (2020a) A new species of predatory nudibranch (Gastropoda: Trinchesiidae) of the coral Pavona decussata. Zoological Studies, 59, 30.
  • Hu, J., Zhang, Y., Yiu, S.K.F., Xie, J.Y. & Qiu, J.W. (2020b) A new species of predatory nudibranch (Gastropoda: Trinchesiidae) of the scleractinian coral Goniopora. Zoological Studies, 59, 62.
  • Huelsenbeck, J.P. & Rannala, B. (2004) Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Systematic Biology, 53, 904-913. https://doi.org/10.1080/10635150490522629
  • Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K.F., von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods, 14, 587-589. https://doi.org/10.1038/nmeth.4285
  • Kitahara, M.V., Cairns, S.D., Stolarski, J., Blair, D. & Miller, D.J. (2010) A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data. PLoS ONE, 5, e11490. https://doi.org/10.1371/journal.pone.0011490
  • Kohler, K.E.& Gill, S.M. (2006) Coral Point Count with Excel extensions (CPCe): A visual basic program for the determination of coral and substrate coverage using random point count methodology. Computers and Geosciences, 32, 1259-1269. https://doi.org/10.1016/j.cageo.2005.11.009
  • Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2018) MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35, 1547-1549. https://doi.org/10.1093/molbev/msy096
  • Lam, K., Morton, B., Hodgson, P. (2008) Ahermatypic corals (Scleractinia: Dendrophylliidae, Oculinidae and Rhizangiidae) recorded from submarine caves in Hong Kong. Journal of Natural History, 42, 729-747. https://doi.org/10.1080/00222930701862724
  • Nemenzo, F. (1960) Systematic studies on Philippine shallow water scleractinians, IV: Suborder Dendrophylliida. Natural and Applied Science Bulletin, 18, 1-21.
  • Nguyen, L.T., Schmidt, H.A., von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution, 32, 268-274. https://doi.org/10.1093/molbev/msu300
  • Ogawa, K. & Takahashi, K. (1993) A revision of Japanese ahermatypic corals around the coastal region with a guide to identification. I. Genus Tubastraea. Nankiseibutu (The Nanki Biological Society), 35, 95-109. [in Japanese]
  • Okonechnikov, K., Golosova, O., Fursov, M., Varlamov, A., Vaskin, Y., Efremov, I., German Grehov, O.G., Kandrov, D., Rasputin, K., Syabro, M. & Tleukenov, T. (2012) Unipro UGENE: A unified bioinformatics toolkit. Bioinformatics, 28, 1166- 1167. https://doi.org/10.1093/bioinformatics/bts091
  • Paradis, E. & Schliep, K. (2019) ape 5.0: An environment for modern phylogenetics and evolutionary analyses in R. Bioinformatics, 35, 526-528. https://doi.org/10.1093/bioinformatics/bty633
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574. https://doi.org/10.1093/bioinformatics/btg180
  • Rowlett, J. (2020) Indo-Pacific Corals. Self-published, Rowlett, 809 pp.
  • Scott, P.J.B. (1984) The corals of Hong Kong. Hong Kong University Press, Hong Kong, 112 pp.
  • Shearer, T.L. & Coffroth, M.A. (2008) DNA BARCODING: barcoding corals: limited by interspecific divergence, not intraspecific variation. Molecular Ecology Resources, 8, 247-255. https://doi.org/10.1111/j.1471-8286.2007.01996.x
  • Song, J.I. (1982) A study on the classification of the Korean Anthozoa 7. Scleractinia (Hexacorallia). Korean Journal of Zoology, 25 (3), 131-148.
  • Stewart, C.N. & Via, L.E. (1993) A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. Biotechniques, 14 (5), 748-750.
  • Todd, P.A. (2008) Morphological plasticity in scleractinian corals. Biological Reviews, 83, 315-337. https://doi.org/10.1111/j.1469-185x.2008.00045.x
  • Vaidya, G., Lohman, D.J. & Meier, R. (2011) Cladistics multi-gene datasets with character set and codon information. Cladistics, 27, 171-180. https://doi.org/10.1111/j.1096-0031.2010.00329.x
  • Wells, J.W. (1982) Notes on Indo-Pacific scleractinian corals, Part 9: New corals from the Galapagos Islands. Pacific Science, 36 (2), 211-219.
  • Wells, J.W. (1983) Annotated list of the scleractinian corals of the Galapagos. University of California Press, Berkley, California, 291 pp.
  • Wickham, H. (2016) ggplot2: Elegant graphics for data analysis. Springer, New York, 211 pp. https://doi.org/10.1007/978-3-319-24277-4_9
  • Xu, T., Feng, D., Tao, J. & Qiu, J.W. (2019) A new species of deep-sea mussel (Bivalvia: Mytilidae: Gigantidas) from the South China Sea: morphology, phylogenetic position, and gill-associated microbes. Deep Sea Research Part I: Oceanographic Research Papers, 146, 79-90. https://doi.org/10.1016/j.dsr.2019.03.001
  • Yeung, Y.H., Xie, J.Y., Kwok, C.K., Kei, K., Ang Jr., P., Chan, L.L., Dellisanti, W., Cheang, C.C., Chow, K.W. & Qiu, J.W. (2021) Hong Kong's subtropical scleractinian coral communities: Baseline, environmental drivers and management implications. Marine Pollution Bulletin, 167, 112289. https://doi.org/10.1016/j.marpolbul.2021.112289
  • Yiu, S.K.F., Chung, S.S.W. & Qiu, J.W. (2021) New observations on the corallivorous nudibranch Phestilla melanobrachia Bergh, 1874 (Gastropoda: Trinchesiidae): morphology, dietary spectrum, and early development. Journal of Molluscan Studies. [accepted for publication]
  • Yu, G., Smith, D.K., Zhu, H., Guan, Y. & Lam, T.T.Y. (2017) GGTREE: An R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution, 9, 28-36. https://doi.org/10.1111/2041-210X.12628