Published September 24, 2021
| Version 1.0.0
Dataset
Open
Mappability .bigwig reference files for hg38/hg19; various read lengths
Creators
Description
This dataset contains reference mappability .bigwig files for the reference genomes hg38 and hg19, for various read lengths. The files were generated with the GEM library (https://sourceforge.net/projects/gemlibrary/files/gem-library/Binary%20pre-release%203/GEM-binaries-Linux-x86_64-core_i3-20130406-045632.tbz2) using this script (based on this work).
The files can be used as input for LIQUORICE (https://liquorice.readthedocs.io) - just select the file that matches your sequencing protocol (i.e. read length) and the reference genome of your mapped .bam files.
Files
Files
(47.2 GB)
| Name | Size | Download all |
|---|---|---|
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md5:dfc13b550043f41ac6c8cfa0f765e119
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2.7 GB | Download |
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md5:0056dd43093ac3610c5a1dcf7acc427d
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1.6 GB | Download |
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md5:729da07b55e11252caa315b2e2057ac6
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1.1 GB | Download |
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md5:fdccb486611b8b1d13ef48476b02df46
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7.5 GB | Download |
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md5:5ffd05ac98abe128ee5dde6d330638ea
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4.2 GB | Download |
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md5:34771c928bf36d0d50996211cb9b9206
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3.0 GB | Download |
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md5:7ca4733b527e522a01ef0942d959595a
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1.9 GB | Download |
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md5:f9389285cf280fb53c24445ade3c6978
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1.4 GB | Download |
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md5:35e0ce689359cf9ec8829501dc99c4c6
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11.4 GB | Download |
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md5:ab95af69704784137877d641270858ae
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7.9 GB | Download |
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md5:a2c32d04387409afb6e0302f8c198e5a
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4.5 GB | Download |
Additional details
References
- Marco‐Sola, S., & Ribeca, P. (2015). Efficient Alignment of Illumina‐Like High‐Throughput Sequencing Reads with the GEnomic Multi‐tool (GEM) Mapper. Current protocols in bioinformatics, 50(1), 11-13.
- https://evodify.com/gem-mappability/