Dataset Open Access
Mappability .bigwig reference files for hg38/hg19; various read lengths
Peter Peneder
This dataset contains reference mappability .bigwig files for the reference genomes hg38 and hg19, for various read lengths. The files were generated with the GEM library (https://sourceforge.net/projects/gemlibrary/files/gem-library/Binary%20pre-release%203/GEM-binaries-Linux-x86_64-core_i3-20130406-045632.tbz2) using this script (based on this work).
The files can be used as input for LIQUORICE (https://liquorice.readthedocs.io) - just select the file that matches your sequencing protocol (i.e. read length) and the reference genome of your mapped .bam files.
| Name | Size | |
|---|---|---|
|
hg19.fa.mappability_100bp.bw
md5:dfc13b550043f41ac6c8cfa0f765e119 |
2.7 GB | Download |
|
hg19.fa.mappability_150bp.bw
md5:0056dd43093ac3610c5a1dcf7acc427d |
1.6 GB | Download |
|
hg19.fa.mappability_250bp.bw
md5:729da07b55e11252caa315b2e2057ac6 |
1.1 GB | Download |
|
hg19.fa.mappability_50bp.bw
md5:fdccb486611b8b1d13ef48476b02df46 |
7.5 GB | Download |
|
hg19.fa.mappability_75bp.bw
md5:5ffd05ac98abe128ee5dde6d330638ea |
4.2 GB | Download |
|
hg38.fa.mappability_100bp.bw
md5:34771c928bf36d0d50996211cb9b9206 |
3.0 GB | Download |
|
hg38.fa.mappability_150bp.bw
md5:7ca4733b527e522a01ef0942d959595a |
1.9 GB | Download |
|
hg38.fa.mappability_250bp.bw
md5:f9389285cf280fb53c24445ade3c6978 |
1.4 GB | Download |
|
hg38.fa.mappability_35bp.bw
md5:35e0ce689359cf9ec8829501dc99c4c6 |
11.4 GB | Download |
|
hg38.fa.mappability_50bp.bw
md5:ab95af69704784137877d641270858ae |
7.9 GB | Download |
|
hg38.fa.mappability_75bp.bw
md5:a2c32d04387409afb6e0302f8c198e5a |
4.5 GB | Download |
Marco‐Sola, S., & Ribeca, P. (2015). Efficient Alignment of Illumina‐Like High‐Throughput Sequencing Reads with the GEnomic Multi‐tool (GEM) Mapper. Current protocols in bioinformatics, 50(1), 11-13.
https://evodify.com/gem-mappability/
| All versions | This version | |
|---|---|---|
| Views | 539 | 539 |
| Downloads | 486 | 486 |
| Data volume | 1.4 TB | 1.4 TB |
| Unique views | 496 | 496 |
| Unique downloads | 225 | 225 |
- Publication date:
- September 24, 2021
- DOI:
-
- Keyword(s):
- mappability bioinformatics LIQUORICE
- License (for files):
- Creative Commons Attribution 4.0 International