Published September 24, 2021
| Version 1.0.0
Dataset
Open
Mappability .bigwig reference files for hg38/hg19; various read lengths
Authors/Creators
Description
This dataset contains reference mappability .bigwig files for the reference genomes hg38 and hg19, for various read lengths. The files were generated with the GEM library (https://sourceforge.net/projects/gemlibrary/files/gem-library/Binary%20pre-release%203/GEM-binaries-Linux-x86_64-core_i3-20130406-045632.tbz2) using this script (based on this work).
The files can be used as input for LIQUORICE (https://liquorice.readthedocs.io) - just select the file that matches your sequencing protocol (i.e. read length) and the reference genome of your mapped .bam files.
Files
Files
(47.2 GB)
| Name | Size | Download all |
|---|---|---|
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md5:dfc13b550043f41ac6c8cfa0f765e119
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2.7 GB | Download |
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md5:0056dd43093ac3610c5a1dcf7acc427d
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1.6 GB | Download |
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md5:729da07b55e11252caa315b2e2057ac6
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1.1 GB | Download |
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md5:fdccb486611b8b1d13ef48476b02df46
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7.5 GB | Download |
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md5:5ffd05ac98abe128ee5dde6d330638ea
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4.2 GB | Download |
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md5:34771c928bf36d0d50996211cb9b9206
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3.0 GB | Download |
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md5:7ca4733b527e522a01ef0942d959595a
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1.9 GB | Download |
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md5:f9389285cf280fb53c24445ade3c6978
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1.4 GB | Download |
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md5:35e0ce689359cf9ec8829501dc99c4c6
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11.4 GB | Download |
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md5:ab95af69704784137877d641270858ae
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7.9 GB | Download |
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md5:a2c32d04387409afb6e0302f8c198e5a
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4.5 GB | Download |
Additional details
References
- Marco‐Sola, S., & Ribeca, P. (2015). Efficient Alignment of Illumina‐Like High‐Throughput Sequencing Reads with the GEnomic Multi‐tool (GEM) Mapper. Current protocols in bioinformatics, 50(1), 11-13.
- https://evodify.com/gem-mappability/