Published September 21, 2021 | Version 1.0
Dataset Open

C.elegans developing embryo (ELEPHANT demo dataset)

Authors/Creators

  • 1. Institut de Génomique Fonctionnelle de Lyon (IGFL), École Normale Supérieure de Lyon, 32 avenue Tony Garnier, 69007 Lyon, France; Centre National de la Recherche Scientifique (CNRS), France

Description

This data is a short subset of one of the training data from the Cell Tracking Challenge (http://celltrackingchallenge.net/) formatted in BigDataViewer format.

Dataset name: C.elegans developing embryo

Training data#: 01

Timepoints: t050 - t059

See details here (http://celltrackingchallenge.net/3d-datasets/).

The use of the data is limited for testing the ELEPHANT software.

Acknowledgements

We are grateful to Robert H. Waterston for kindly giving us a permission to distribute this data for testing the ELEPHANT software.

Original paper

Murray, J., Bao, Z., Boyle, T. et al. Automated analysis of embryonic gene expression with cellular resolution in C. elegans. Nat Methods 5, 703–709 (2008). https://doi.org/10.1038/nmeth.1228

Files

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