Dataset Open Access

DeepSTARR manuscript data

de Almeida, Bernardo P

This repository holds the trained DeepSTARR model and the data used to train and evaluate the model.

Files:

  • <set>.fa
    • FASTA files with DNA sequences of genomic regions from train/val/test sets.
  • <set>*.txt
    • Files with developmental and housekeeping activity of genomic regions from train/val/test sets.
  • DeepSTARR.model.h5 and DeepSTARR.model.json
    • DeepSTARR Keras model
Files (195.9 MB)
Name Size
DeepSTARR.model.h5
md5:7e53a9351b2520a4713a5ffdb5f1566c
2.6 MB Download
DeepSTARR.model.json
md5:9b796f79441e53dc75dd79b911fff872
11.6 kB Download
Sequences_activity_Test.txt
md5:011690ca80cf967d56fefd0c1386419f
4.5 MB Download
Sequences_activity_Train.txt
md5:4e65afa021fd426c74dbf24c31b8bbf9
43.7 MB Download
Sequences_activity_Val.txt
md5:5f30e863b2239e4f9ade6e7b81b3ff3c
4.4 MB Download
Sequences_Test.fa
md5:c2d831a6e2cfb9345fa5e52de76bb453
12.0 MB Download
Sequences_Train.fa
md5:fe474a31c23db2daf7dc4d1fc49a8e5a
116.9 MB Download
Sequences_Val.fa
md5:9d1a0e5c9228aa033378af93074109e6
11.8 MB Download
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