Dataset Open Access
DeepSTARR manuscript data
de Almeida, Bernardo P
This repository holds the trained DeepSTARR model and the data used to train and evaluate the model.
Files:
- <set>.fa
- FASTA files with DNA sequences of genomic regions from train/val/test sets.
- <set>*.txt
- Files with developmental and housekeeping activity of genomic regions from train/val/test sets.
- DeepSTARR.model.h5 and DeepSTARR.model.json
- DeepSTARR Keras model
Files
(195.9 MB)
| Name | Size | |
|---|---|---|
|
DeepSTARR.model.h5
md5:7e53a9351b2520a4713a5ffdb5f1566c |
2.6 MB | Download |
|
DeepSTARR.model.json
md5:9b796f79441e53dc75dd79b911fff872 |
11.6 kB | Download |
|
Sequences_activity_Test.txt
md5:011690ca80cf967d56fefd0c1386419f |
4.5 MB | Download |
|
Sequences_activity_Train.txt
md5:4e65afa021fd426c74dbf24c31b8bbf9 |
43.7 MB | Download |
|
Sequences_activity_Val.txt
md5:5f30e863b2239e4f9ade6e7b81b3ff3c |
4.4 MB | Download |
|
Sequences_Test.fa
md5:c2d831a6e2cfb9345fa5e52de76bb453 |
12.0 MB | Download |
|
Sequences_Train.fa
md5:fe474a31c23db2daf7dc4d1fc49a8e5a |
116.9 MB | Download |
|
Sequences_Val.fa
md5:9d1a0e5c9228aa033378af93074109e6 |
11.8 MB | Download |
681
3,840
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 681 | 681 |
| Downloads | 3,840 | 3,840 |
| Data volume | 39.8 GB | 39.8 GB |
| Unique views | 605 | 605 |
| Unique downloads | 1,305 | 1,305 |
Indexed in
- Publication date:
- September 20, 2021
- DOI:
-
- License (for files):
- Creative Commons Attribution 4.0 International