Biodiversity Literature Repository

Submit to community
Liberated Data
Published January 19, 2011 | Version v1
Journal article Restricted

Phylogenetic relationships within the genus Staurois (Anura, Ranidae) based on 16S rRNA sequences

Authors/Creators

  • 1. School of Life Sciences and Technology - Institut Teknologi Bandung, Labtek XI Building, 10 Jalan Ganesa, Bandung - 40132, Indonesia. E-mail: umilaela@gmail.com, iskandar@sith.itb.ac.id
  • 2. Department Biological Sciences-National University of Singapore, Kent Ridge, 117543, Singapore. E-mail: dbsbdp@nus.edu.sg, meier@nus.edu.sg, dbssnk@nus.edu.sg
  • 3. Department Biological Sciences-National University of Singapore, Kent Ridge, 117543, Singapore. E-mail: dbsbdp@nus.edu.sg, meier@nus.edu.sg, dbssnk@nus.edu.sg & University Scholars Programme-National University of Singapore, Kent Ridge, 119260, Singapore. E-mail: meier@nus.edu.sg University of Kansas, Dyche Hall, 1345 Jayhawk Blvd, Lawrence, KS 66045 - 7593, USA. E-mail: rafe@ku.edu

Description

Arifin, Umilaela, Iskandar, Djoko T., Bickford, David P., Brown, Rafe M., Meier, Rudolf, Kutty, Sujatha Narayanan (2011): Phylogenetic relationships within the genus Staurois (Anura, Ranidae) based on 16S rRNA sequences. Zootaxa 2744 (1): 39-52, DOI: 10.11646/zootaxa.2744.1.3, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.2744.1.3

Files

Restricted

The record is publicly accessible, but files are restricted. Log in to check if you have access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:FFB5DD47FFA2FFEFFFA612019A7DA10C

Related works

Cites
Publication: 10.1111/j.1365-2699.2010.02378.x (DOI)
Has part
Figure: 10.5281/zenodo.5291407 (DOI)
Figure: 10.5281/zenodo.5291409 (DOI)
Figure: 10.5281/zenodo.5291413 (DOI)
Figure: 10.5281/zenodo.5291417 (DOI)

References

  • Alcala, A.C. & Brown, W.C. (1998) Philippine Amphibians: an Illustrated Field Guide. Bookmark Press, Makati City, Philippines.
  • Ashton, K.G. & de Queiroz, K. (2001) Molecular systematic of the western rattlesnake, Crotalus viridis (Viperidae), with comments on the utility of the D-loop in phylogenetic studies of snakes. Molecular Phylogenetics Evolution, 21, 176-189.
  • Boulenger, G.A. (1918) Remarks on the batrachian genera Cornufer Tschudi, Platymantis Gunther, Simomantis g.n. and Staurois Cope. Annals and Magazine of the Natural History, 1, 372-375.
  • Brown, R.M. & Guttman, S.I. (2002) Phylogenetic systematics of the Rana signata complex of Philippine and Bornean stream frogs: reconsideration of Huxley's modification of Wallace's Line at the Oriental-Australian faunal zone interface. Biological Journal of the Linnaean Society, 76, 393-461.
  • Brown, R.M. & Diesmos, A.C. (2009) Philippines, Biology. Pages. 723-732 in Encyclopedia of Islands. (Gillespie, R., and D. Clague, Eds.). University of California Press, Berkeley.
  • Brown, R.M., Siler, C.D., Diesmos A.C. & Alcala, A.C. (2009). The Philippine frogs of the genus Leptobrachium (Anura; Megophryidae): phylogeny-based species delimitation, taxonomic revision, and descriptions of three new species. Herpetological Monographs, 23, 1-44.
  • de Queiroz, K. & Good, D.A. (1997) Phenetic clustering in biology: A critique. Quarterly Review of Biology, 72, 3-30.
  • de Queiroz, K. (1998) The general lineage concept of species, species criteria, and the process of speciation: A conceptual unification and terminological recommendations. Pages 57-75 in Endless forms: Species and speciation (D. J. Howard, and S. H. Berlocher, eds.). Oxford University Press, New York.
  • de Queiroz, K. (1999) The general lineage concept of species and the defining properties of the species category. Pages 49-89 in Species: New interdisciplinary essays (R. A. Wilson, ed.). MIT Press, Cambridge, Massachusetts.
  • de Queiroz, K. (2005a) Different species problems and their resolution. BioEssays, 27, 1263-1269.
  • de Queiroz, K. (2005b) A unified concept of species and its consequences for the future of taxonomy. Proceeding of California Academic of Science, 56, 196-215.
  • de Queiroz, K. (2005c) Ernst Mayr and the modern concept of species. Proceeding of Natural Academic of Science, 102, 6600- 6607.
  • de Queiroz, K. (2007) Species concepts and species delimitation. Systematic Biology, 56, 879-886.
  • Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792-1797.
  • Esselstyn, J.A., Oliveros, C.H., Moyle, R.G., Peterson, A.T., McGuire, J.A. & Brown, R.M. (2010) Integrating phylogenetic and taxonomic evidence illuminates complex biogegraphic patterns along Huxley's modification of Wallace's Line. Journal of Biogeography. doi:10.1111/j.1365-2699.2010.02378.x
  • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
  • Florendo, F.F. (1994) Tertiary arc rifting in northern Luzon, Philippines. Tectonics, 13, 623-640.
  • Frost, D.R. (2009) Amphibian species of the world: an online reference. American Museum of Natural History, New York. Electronic Database Available at http://research.amnh.org/herpetology/amphibia/index.html.
  • Goebel, A.M., Donneley, J.M. & Atz, M.E. (1999) PCR primers and amplification methods for 12S ribosomal DNA, the control region, cytochrome oxidase I, and cytochrome b in Bufonids, and other frogs, and an overview of PCR primers which have amplified DNA in amphibian successfully. Molecular Phylogenetic Evolution, 11, 163-199.
  • Hall, R. (1996) Reconstucting Cenozoic SE Asia. In: Hall, R, & Blundel, J. D.. Eds. Tectonic Evolution of Southeast Asia. Bath: Geological Society Publishing House. p 153-183.
  • Hall, R. (1998) The plate tectonics of Cenozoic SE Asia and the distribution of land and sea. In: Hall, R., & J. D. Blundel. (Eds.) Biogeography and Geographical Evolution of Southeast Asia. Blackhuys Publishers. Leiden. p 1-23.
  • Hall, R. (2001) Cenozoic reconstruction of SE Asia and the SW Pacific: Changing patterns of Land and sea. In: Metcalfe, I., J. M. B. Smith, M. Morwood & I. D. Davidson (Eds.). Faunal and Floral Migrations and Evolution in SE Asia-Australia. A.A. Balkema (Swets&Zeitlinger Publishers) Lisse. p 35-56.
  • Hall, R. (2002) Cenozoic geological and plate tectonic evolution of SE Asia and the SW Pacific: computer based reconstructions, model and animations. Journal of Asian Earth Sciences, 20, 353-431.
  • Inger, R.F. (1954) Systematics and zoogeography of the Philippine Amphibia. Fieldiana: Zoology, 33, 185-531.
  • Inger, R.F. (1966) The systematics and zoogeography of the amphibians of Borneo. 2nd ed. Fieldiana: Zool ogy, 52, 1-402.
  • Inger, R.F. & Stuebing, R.B. (1997) A Field Guide to the Frogs of Borneo. 2nd edition. Natural History Publications (Borneo) Sdn, Bhd, Sabah, Malaysia, pp154-158.
  • Iskandar, D.T. & Colijn, E. (2000) Preliminary checklist of Southeast Asian and New Guinean herpetofauna. I. Amphibians. Treubia, 31, 1-133.
  • Leong, K.M. (1974) The geology and mineral resources of Upper Segama valley and Darvel Bay, Sabah. Malaysia Geological Survey Borneo Region, Memoir, 354 pp.
  • Liu, W.-z., Lathrop, A., Fu, J., Yang, D. & Murphy, R.W. (2000) Phylogenetic relationships among East Asian bufonids inferred from mitochondrial DNA sequences (Anura: Amphibia). Molecular Phylogenetic Evolution, 14, 423-435.
  • Matsui, M., Mohamed, M., Shimada, T. & Sudin, A. (2007) Resurrection of Staurois parvus from S. tuberilinguis from Borneo (Amphibia, Ranidae). Zoological Sciences, 24, 101-106.
  • Mocquard, F. (1980) Recherches sur la faune herpetologique des Iles de Borneo et de Palawan. Nouvelles Archives du Museum D'Histoire Naturelle De Paris, 2, 115-168.
  • Ngo, A., Murphy, R.W., Liu, W., Lathrop, A. & Orlov, N.L. (2006) The phylogenetic relationships of the Chinese and Vietnamese waterfall frogs of the genus Amolops. Amphibia-Reptilia, 27, 81-92.
  • Nylander, J.A.A. (2004) MrModeltest v2.2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
  • Palumbi, S.R., Martin, A., Romano, S., McMillan, W.O., Stice, L. & Grabowski, G. (1991) The Simple Fool's Guide to PCR. Version 2.0. Privately published document compiled by S. Palumbi, Dept. Zoology, Univ. Hawaii, Honolulu, HI. 96822.
  • Ronquist, F.R. & Huelsenbeck, J.P. (2003) Mr.Bayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
  • Serb, J.M., Philips, C.A. & Iverson, J.B. (2001) Molecular phylogeny and biogeography of Kinosternon flavescens based on complete mitochondrial control region sequences. Molecular Phylogenetics and Evolution, 18, 149-162.
  • Swofford, D.L. (2003) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods). Ver. 4.0b10. Sinauer Assoc. Sunderland, MA.
  • Taylor, E.H. (1920) Philippine Amphibia. Phillippine Journal Science, 16, 213-359.
  • Wang, H.Y., Ysai, M.P., Tu, M.C. & Lee, S.C. (2000) Maps of pleistocene sea levels in Southeast Asia: Shorelines, River System and Time Durations. Journal Biogeography, 27, 1153-1167.
  • Wiens, J.J. (1993) Systematics of the leptodactylid frog genus Telmatobius in the Andes of Northern Peru. University of Kansas Museum of Natural History Occasional Papers, 162, 1-76.
  • Wiens, J.J. (2004a) Speciation and ecology revisited: Phylogenetic niche conservatism and the origin of species. Evolution, 58, 193-197.
  • Wiens, J.J. (2004b) What is speciation and how should we study it? American Naturalis, 163, 914-923.
  • Wiens, J.J. & Graham, C.H. (2005) Niche conservatism: Integrating evolution, ecology, and conservation biology. Annual Review of Ecology Evolution and Systematics, 36, 519-539.
  • Wiens, J.J. & Penkrot, T.L. (2002) Delimiting species based on DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus). Systematic Biology, 51, 69-91.
  • Wiens, J.J., Sukumaran, J., Pyron, R.A. & Brown, R.M. (2009) Evolutionary and biogeographic origins of high tropical diversity in old world frogs (Ranidae). Evolution, 63, 1217-1231.
  • Wilgenbusch, J.C., Warren, D.L. & Swofford, D.L. (2004) AWTY: A system for graphical exploration of MCMC convergence in Bayesian phylogenetic inference. Available from http://ceb.csit.fsu.edu/awty (accessed 30 May 2010)
  • Van Kampen, P.N. (1923) The Amphibians of the Indo-Australian Archipelago. Leiden, E. J. Brill, 304 pp.
  • Zaldivar-Riveron, A., Leon-Regagnon, V. & de Oca, A.N.M. (2004) Phylogeny of the Mexican coastal leopard frogs of the Rana berlandieri group based on mtDNA sequences. Molecular Phylogenetics and Evolution, 30, 38-49.