Dataset Open Access

Training data for MaxQuant and Msstats TMT analysis in Galaxy

Klemens Fröhlich; Matthias Fahrner; Melanie C. Föll

The files serve as input and intermediate results for a MaxQuant and MsstatsTMT training on  lysine methyl transferase 9 knockdown and control cell proteomics (https://doi.org/10.1186/s12935-020-1141-2) in the Galaxy training network (https://training.galaxyproject.org).

Input files: human FASTA protein database for Maxquant. MaxQuant experimental design template, MSstatsTMT annotation file

Intermediate result files: MaxQuant protein groups and evidence

Files (77.0 MB)
Name Size
annotation_exercise.txt
md5:39c598a712d27eb7b0261ee973e6f940
9.8 kB Download
MaxQuant experimental design template.tabular
md5:1aa6a0401ae30d0f3e09429881f7a22b
296 Bytes Download
MaxQuant Result evidence.tabular
md5:137505944ef61ce519a339586617890a
57.6 MB Download
MaxQuant Result protein groups.tabular
md5:092d644f2010a55d1c54762809115672
5.7 MB Download
MSstatsTMT annotation file.tabular
md5:60f8ae4de39a2ce3228d447c1cb8022b
6.5 kB Download
protein_database.fasta
md5:ecd70d810a9a44d13bebc7abd5c12628
13.6 MB Download
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