Published June 25, 2014 | Version v1
Journal article Restricted

Phylogenetic relationships of Discyphus scopulariae (Orchidaceae, Cranichideae) inferred from plastid and nuclear DNA sequences: evidence supporting recognition of a new subtribe, Discyphinae

  • 1. Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma de México, Apartado Postal 70-367, 04510 México, Distrito Federal, México; E-mail: gasc@ib.unam.mx
  • 2. Universidade Estadual de Feira de Santana, Departamento de Ciências Biológicas, Av. Transnordestina s.n., 44036-900, Feira de Santana, Bahia, Brazil
  • 3. Fazenda Rio do Negro, Entre Rios, Bahia, Brazil

Description

Salazar, Gerardo A., Berg, Cássio Van Den, Popovkin, Alex (2014): Phylogenetic relationships of Discyphus scopulariae (Orchidaceae, Cranichideae) inferred from plastid and nuclear DNA sequences: evidence supporting recognition of a new subtribe, Discyphinae. Phytotaxa 173 (2): 127-139, DOI: 10.11646/phytotaxa.173.2.3, URL: http://dx.doi.org/10.11646/phytotaxa.173.2.3

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:FFB62D56FFCAFFF86D68283277149D41
URL
http://publication.plazi.org/id/FFB62D56FFCAFFF86D68283277149D41

References

  • Alvarez-Molina,A.& Cameron, K.M. (2009) Molecular phylogenetics of Prescottiinae s.l. and their close allies (Orchidaceae, Cranichideae) inferred from plastid and nuclear ribosomal DNA sequences. American Journal of Botany 96: 1020-1040. http://dx.doi.org/10.3732/ajb.0800219
  • Baldwin, B.G., Sanderson, M.J., Porter, J.M., Wojciechowski, M.F. Campbell, C.S. & Donoghue, M.J. (1995) The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277. http://dx.doi.org/10.2307/2399880
  • Balogh, P. (1982) Generic redefinition in subtribe Spiranthinae (Orchidaceae). American Journal of Botany 69: 1119-1132. http://dx.doi.org/10.2307/2443086
  • Batista, J.A.N., Meneguzzo, T.E.C., Salazar, G.A., Bianchetti, L. de B. & Ramalho, A.J. (2011) Phylogenetic placement, taxonomic revision, and a new species of Nothostele (Orchidaceae), an enigmatic genus endemic to the cerrado of central Brazil. Botanical Journal of the Linnean Society 165: 348-363. http://dx.doi.org/10.1111/j.1095-8339.2011.01113.x
  • Benitez-Vieira, S., Medina, A.M., Glinos, E. & Cocucci, A.A. (2006) Pollinator mediated selection on floral traits and size of floral display in Cyclopogon elatus, a sweat bee-pollinated orchid. Functional Ecology 20: 948-957. http://dx.doi.org/10.1111/j.1365-2435.2006.01179.x
  • Bergsten, J. (2005) A review of long-branch attraction. Cladistics 21: 163-193. http://dx.doi.org/10.1111/j.1096-0031.2005.00059.x
  • Blume, C.L. (1825) Bijdragen tot de flora van Nederlandsch Indie 8. National Printer, Jakarta, 434 pp. http://dx.doi.org/10.5962/bhl.title.395
  • Brown, R. (1813) Hortus Kewensis, 2nd ed., 5: 188-222.
  • Cameron, K.M. (2007) Molecular phylogenetics of Orchidaceae: the first decade of DNA sequencing. In: Cameron, K.M., Arditti, J. & Kull, T. (eds.) Orchid biology: reviews and perspectives, 9. New York Botanical Garden Press, New York, pp 163-200
  • Catling P.M. (1983) Pollination of northeastern North American Spiranthes (Orchidaceae). Canadian Journal of Botany 61: 1080-1093. http://www.nrcresearchpress.com/doi/abs/10.1139/b83-116
  • Chase, M.W. & Albert, V.A. (1998) A perspective of the contribution of plastid rbcL DNA sequences to angiosperm phylogenetics. In: Soltis, D.E., Soltis, P.S & Doyle, J.F. (eds.) Molecular systematics of plants II: DNA sequencing. Kluwer, London, pp. 488-507.
  • Chase, M.W., Cameron, K.M., Barrett, R.L. & Freudenstein, J.V. (2003) DNA data and Orchidaceae systematics: a new phylogenetic classification. In: Dixon, K.W., Kell, S.P., Barrett, R.L. & Cribb, P.J. (eds.) Orchid conservation. Natural History Publications (Borneo), Kota Kinabalu, pp. 69-89.
  • Cisternas, M., Salazar, G.A., Verdugo, G., Novoa, P., Caderon, X. & Negritto, M. (2012) Phylogenetic analysis of Chloraeinae (Orchidaceae) based on plastid and nuclear DNA sequences. Botanical Journal of the Linnean Society 168: 258-277. http://dx.doi.org/10.1111/j.1095-8339.2011.01200.x
  • Clements, M.A., Jones, D.L., Sharma, I.K., Nightingale, M.E., Garratt, M. J., Fitzgerald, K.J., Mackenzie, A.M. & Molloy, B.P.J. (2002) Phylogenetics of Diurideae (Orchidaceae) based on the internal transcribed spacer (ITS) regions of nuclear ribosomal DNA. Lindleyana 17: 135-171.
  • Cogniaux, A. (1906) Addenda et emendanda. Flora Brasiliensis 3(6): 525-584.
  • Dressler, R.L. & Dodson, C.H. (1960) Classification and phylogeny of the Orchidaceae. Annals of the Missouri Botanical Gardens 47: 25-68.
  • Endlicher, S. (1842) Mantissa botanica sistens genera plantarum, supplementum, 2. Beck, Vienna, 109 pp.
  • Felsenstein, J. (1978) Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology 27: 401-410. http://dx.doi.org/10.2307/2412923
  • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791. http://dx.doi.org/10.2307/2408678
  • Figueroa, C., Salazar, G.A., Zavaleta, A. & Engleman, M. (2008) Root character evolution and systematics in Cranichidinae, Prescottiinae and Spiranthinae (Orchidaceae, Cranichideae). Annals of Botany 101: 509-520. http://dx.doi.org/10.1093/aob/mcm328
  • Figueroa, C., Salazar, G.A., Terrazas, T. & Davila, P. (2012) Estructura y desarrollo del ginostemio en Dichromanthus michuacanus (Orchidaceae, Spiranthinae). Revista Mexicana de Biodiversidad 83: 73-82.
  • Foldats, E. (1969) Orchidaceae. In: T. Lasser (ed.), Flora de Venezuela, 15(1). Instituto Botanico, Caracas, 502 pp.
  • Garay, L.A. (1978) Studies in American orchids X. Botanical Museum Leaflets (Harvard University) 26: 1-38.
  • Garay, L.A. (1982) A generic revision of the Spiranthinae. Botanical Museum Leaflets (Harvard University) 28: 277-425.
  • Gorniak, M., Mytnik-Ejsmont, J., Rutkowski, P., Tukallo, P., Minasiewicz, J. & Szlachetko, D.L. (2006) Phylogenetic relationships within the subtribe Spiranthinae s.l. (Orchidaceae) inferred from the nuclear ITS region. Biodiversity Research and Conservation 1-2: 18-24.
  • Hilu, K.W. & Liang, H. (1997) The matK gene: sequence variation and application in plant systematics. American Journal of Botany 84: 830-839. http://dx.doi.org/10.2307/2445819
  • Hooker, W.J. (1824) Exotic flora, containing figures and descriptions of new, rare or otherwise interesting exotic plants, 2. Blackwood, Edinburgh, 150 pp.+ plates. http://dx.doi.org/10.5962/bhl.title.51264
  • Hudson, W. (1762) Flora Anglica. Published by the author, London, 506 pp.
  • Huelsenbeck, J.P. (1997) Is the Felsenstein zone a flytrap? Systematic Biology 46: 69-74. http://dx.doi.org/10.1093/sysbio/46.1.69
  • Jones, D.L., Clements, M.A., Sharma, I.K., Mackenzie, A.M. & Molloy, B.P.J. (2002) Nomenclatural notes arising from studies into the tribe Diurideae (Orchidaceae). Orchadian 13: 437-468.
  • Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772-780. http://dx.doi.org/10.1093/molbev/mst010
  • Kores, P.J., Molvray, M., Weston, P.H., Hopper, S.D., Brown, A.P., Cameron, K.M. & Chase, M.W. (2001) A phylogenetic analysis of Diurideae (Orchidaceae) based on plastid DNA sequence data. American Journal of Botany 88: 1903-1914. http://dx.doi.org/10.2307/3558366
  • Kraenzlin, F. (1899) Orchidaceae Lehmannianae in Guatemala, Costarica, Columbia et Ecuador collectae, quas determinavit et descripsit. Botanische Jahrbucher fur Systematik, Pflanzengeschichte und Pflanzengeographie 26: 437-502.
  • Kraenzlin, F. (1919) Zwei neue und eine kritische Orchidacee. Notizblatt Botanisches Garten zu Berlin-Dahlem 7: 319-322.
  • Kuntze, O. (1891) Revisio generum plantarum, 2. Felix, Leipzig, 1011 pp. http://dx.doi.org/10.5962/bhl.title.327
  • Lindley, J. (1840) Tribe VI. Neottieae. In: The genera and species of orchidaceous plants. Ridgway, London, pp. 441-524.
  • Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, pp. 1-8. http://dx.doi.org/10.1109/gce.2010.5676129
  • Mohr, C.T. (1901) Plant life of Alabama. Contributions from the U.S. National Herbarium, 6. U.S. Department of Agriculture, Washington, D.C., 921 pp.
  • Ormerod, P. & Cribb, P.J. (2003) Goodyerinae. In: Pridgeon A.M., Cribb P.J., Chase M.W., and Rasmussen, F.N. (eds.), Genera orchidacearum 3: Orchidoideae part 2, Vanilloideae. Oxford University Press, Oxford, pp. 63-153.
  • Pfeiffer, L. (1874) Nomenclator botanicus, 2(1). Fischer, Cassel, 1876 pp.
  • Pfitzer, E. (1887) Entwurf einer naturlichen Anordnung der Orchideen. Winter's , Heildelberg, 114 pp.
  • Presl, C. (1827) Reliquia Haenkeanae seu, Descriptiones et icones plantarum: quas in America meridionali et boreali, in insulis Philippinis et Marianis collegit Thaddaeus Haenke, vol. 1, fasc. II. Calve, Prague, pp. 85-148. http://dx.doi.org/10.5962/bhl.title.48628
  • Pridgeon, A.M., Cribb, P.J., Chase, M.W. & Rasmussen, F.N. (eds.). (2003) Genera orchidacearum, 3: Orchidoideae part 2, Vanilloideae. Oxford University Press, Oxford, 358 pp.
  • Reichenbach, H.G. (1854a) Die Wagener'schen Orchideen. Bonplandia (Hannover) 2: 10-26.
  • Reichenbach, H.G. (1854b) Xenia orchidacea. Brockhaus, Leipzig, 246 pp.
  • Richard, A. (1828) Monographie des orchidees des Iles de France et de Bourbon. Memoires de la Societe d'Histoire Naturelle de Paris 4: 1-74.
  • Richard, A. & Galeotti, H.G. (1845) Orchidographie mexicaine, d'apres les echantillons, notes et dessins de MM. Galeotti, Linden, Funck, Ghiesbreght. Annales des sciences naturelles; comprenant la physiologie animale et vegetale, l'anatomie comparee des deux regnes, la zoologie, la botanique, la mineralogue et la geologie, Paris, 3 (3): 15-33.
  • Richard, L.C. (1817) De orchideis Europaeis annotationes. Memoires du Museum d´Histoire Naturelle Paris 4: 1-37. http://dx.doi.org/10.5962/bhl.title.15465
  • Ridley, H.N. (1907) Materials for a flora of the Malayan Peninsula, 1. Methodist Publishing House, Singapore, 233 pp.
  • Salazar, G.A. (2003a) Galeottiellinae. In: Pridgeon A.M., Cribb P.J., Chase M.W., and Rasmussen, F.N. (eds.), Genera orchidacearum 3: Orchidoideae part 2, Vanilloideae. Oxford University Press, Oxford, pp. 59-63.
  • Salazar, G.A. (2003b) Spiranthinae. In: Pridgeon A.M., Cribb P.J., Chase M.W., and Rasmussen, F.N. (eds.), Genera orchidacearum 3: Orchidoideae part 2, Vanilloideae. Oxford University Press, Oxford, pp. 164-278.
  • Salazar, G.A. (2009) DNA, morphology and systematics of Galeoglossum (Orchidaceae, Cranichidinae). In: Pridgeon A.M., Suarez J.P., eds. Proceedings of the second scientific conference on Andean orchids. Universidad Tecnica Particular de Loja, Loja, pp. 161-172.
  • Salazar, G.A. & Ballesteros-Barrera, C. (2010) Sotoa, a new genus of Spiranthinae (Orchidaceae) from Mexico and the southern United States. Lankesteriana 9: 491-504.
  • Salazar, G.A. & Dressler, R.L. (2011) The leaves got it right again: DNA phylogenetics supports a sister-group relationship between Eurystyles and Lankesterella (Orchidaceae, Spiranthinae). Lankesteriana 11: 337-347.
  • Salazar, G.A. & Jost. L. (2012) Quechua, a new monotypic genus of Andean Spiranthinae (Orchidaceae). Systematic Botany 37: 78-86. http://dx.doi.org/10.1600/036364412x616657
  • Salazar, G.A., Chase, M.W. & Soto Arenas, M.A. (2002) Galeottiellinae, a new subtribe and other nomenclatural changes in Spiranthinae (Orchidaceae, Cranichideae). Lindleyana 17: 172-176.
  • Salazar, G.A., Chase, M.W., Soto, M.A.& Ingrouille, M.(2003) Phylogenetics of Cranichideae with emphasis on Spiranthinae (Orchidaceae, Orchidoideae): evidence from plastid and nuclear DNA sequences. American Journal of Botany 90: 777-795. http://dx.doi.org/10.3732/ajb.90.5.777
  • Salazar, G.A., Cabrera, L.I., Madrinan, S. & Chase, M.W. (2009) Phylogenetic relationships of Cranichidinae and Prescottiinae (Orchidaceae, Cranichideae) inferred from plastid and nuclear DNA sequences. Annals of Botany 104: 403-416. http://dx.doi.org/10.1093/aob/mcn257
  • Salazar, G.A., Cabrera, L.I. & Figueroa, C. (2011a) Molecular phylogenetics, floral convergence and systematics of Dichromanthus and Stenorrhynchos (Orchidaceae, Spiranthinae). Botanical Journal of the Linnean Society 167: 1-18. http://dx.doi.org/10.1111/j.1095-8339.2011.01161.x
  • Salazar, G.A., Chavez-Rendon, C., Jimenez-Machorro, R. & de Avila, A. (2011b) A new species of Galeoglossum (Orchidaceae, Cranichidinae) from Oaxaca, Mexico. Systematic Botany 36: 261-267. http://dx.doi.org/10.1600/036364411x569462
  • Schlechter, R. (1919) LIX. Zwei interessante Gattungen der Spiranthinae. Repertorium Specierum Novarum Regni Vegetabilis 15: 416-417. http://dx.doi.org/10.1002/fedr.19190152506
  • Schlechter, R. (1920) Versuch einer systematischen Neuordnung der Spiranthinae. Beihefte zum Botanischen Centralblatt 37: 317-454.
  • Schlechter, R. (1926) Das System der Orchidaceen. Notizblatt des Botanischen Garten und Museums zu Berlin-Dahlem 88: 563-591. http://dx.doi.org/10.2307/3994326
  • Singer, R. (2002) The pollination biology of Sauroglossum elatum Lindl. (Orchidaceae: Spiranthinae): moth pollination and protandry in a Neotropical Spiranthinae. Botanical Journal of the Linnean Society 138: 9-16. http://dx.doi.org/10.1046/j.1095-8339.2002.00003.x
  • Singer, R.B. & Cocucci, A.A. (1999) Pollination mechanism in southern Brazilian orchids which are exclusively or mainly pollinated by halictid bees. Plant Systematics and Evolution 217: 101-117. http://dx.doi.org/10.1007/bf00984924
  • Singer, R.B. & Sazima, M. (1999) The pollination mechanism in the 'Pelexia alliance' (Orchidaceae: Spiranthinae). Botanical Journal of the Linnean Society 131: 249-262. http://dx.doi.org/10.1111/j.1095-8339.1999.tb00768.x
  • Singer, R.B. & Sazima, M. (2000). The pollination of Stenorrhynchos lanceolatus (Aublet) L.C.Rich. (Orchidaceae: Spiranthinae) by hummingbirds in southeastern Brazil. Plant Systematics and Evolution 223: 221-227. http://dx.doi.org/10.1007/bf00985281
  • Singer, R.B. & Sazima, M. (2001) Pollination mechanism in three sympatric Prescottia (Orchidaceae: Prescottinae) species from southeastern Brazil. Annals of Botany 88: 999-1005. http://dx.doi.org/10.1006/anbo.2001.1535
  • Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. http://dx.doi.org/10.1093/bioinformatics/btl446
  • Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web-servers. Systematic Biology 75: 758-771. http://dx.doi.org/10.1080/10635150802429642
  • Swartz, O. (1788) Nova genera & species plantarum. Swederi, Stockholm, 152 pp. http://dx.doi.org/10.5962/bhl.title.433
  • Swofford, D.L. (2002) PAUP*. Phylogenetic analysis using parsimony (*and other methods), v. 4.0 beta 10. Sinauer, Sunderland.
  • Szlachetko, D.L. (1992) Genera and species of the subtribe Spiranthinae (Orchidaceae), 5. Discyphus. Fragmenta Floristica et Geobotanica 37: 437-441.
  • Szlachetko, D.L. (1995) Systema orchidalium. Fragmenta Floristica et Geobotanica (Supplement) 3: 1-152.
  • Szlachetko, D.L. & Rutkowski, P. (2000) Gynostemia orchidalium. I. Apostasiaceae, Cypripediaceae, Orchidaceae (Thelymitroideae, Orchidoideae, Tropidioideae, Spiranthoideae, Neottioideae, Vanilloideae). Acta Botanica Fennica 169:1-379.
  • Taberlet, P., Gielly, L., Pautou, G. & Bouvet, J. (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109. http://dx.doi.org/10.1007/bf00037152
  • Walter, T. (1788) Flora Caroliniana secundum systema vegetabilium perillustris Linnaei digesta. Fraser, London, 263 pp. http://dx.doi.org/10.5962/bhl.title.9458