Published September 5, 2014 | Version v1

Phylogenetic position of the diatom genus Geissleria Lange-Bertalot & Metzeltin and description of two new species from Siberian mountain lakes

  • 1. Limnological Institute Siberian Division, Russian Academy of Sciences, Ulan-Batorskaya 3, RUS-664033, Irkutsk, Russia & Aquatic Ecology, Department of Biology, Lund University, Ecology Building, 22362 Lund, Sweden

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Kulikovskiy, Maxim, Gusev, Evgeniy, Andreeva, Svetlana, Annenkova, Natalia (2014): Phylogenetic position of the diatom genus Geissleria Lange-Bertalot & Metzeltin and description of two new species from Siberian mountain lakes. Phytotaxa 177 (5): 249-260, DOI: 10.11646/phytotaxa.177.5.1, URL: http://dx.doi.org/10.11646/phytotaxa.177.5.1

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References

  • Abarca, N., Jahn, R., Zimmermann, J., Enke, N. (2014) Does the cosmopolitan diatom Gomphonema parvulum (Kutzing) Kutzing have a biogeography? PLoS ONE 9(1): 1-18. http://dx.doi.org/10.1371/journal.pone.0086885
  • Agardh, C.A. (1830) Conspectus Criticus Diatomacearum. Part 1: 1-16. Lundae. Litteris Berlingianis.
  • Alverson, A.J. & Theriot E.C. (2005) Comments on recent progress toward reconstructing the diatom phylogeny. J. Nanosci. Nanotechnol. 5: 57-62. http://dx.doi.org/10.1166/jnn.2005.007
  • Alverson, A.J., Cannone, J.J., Gutell, R.R. & Theriot E.C. (2006) The evolution of elongate shape in diatoms. Journal of Phycology 42: 655-668. http://dx.doi.org/10.1111/j.1529-8817.2006.00228.x
  • Benhke, A., Friedl, T., Chepurnov, V.A. & Mann, D.G. (2004) Reproductive compatibility and rDNA sequence analysis in the Sellaphora pupula species complex (Bacillariophyta). Journal of Phycology 40(1): 193-208. http://dx.doi.org/10.1046/j.1529-8817.2004.03037.x
  • Bory de Saint-Vincent J-B.G.M. (1822) Dictionnaire Classique d'Histoire Naturelle. Vol. 2. Paris. http://dx.doi.org/10.5962/bhl.title.33901
  • Bruder, K. & Medlin, L.K. (2007) Molecular assessment of phylogenetic relationships in selected species/genera in the naviculoid diatoms (Bacillariophyta). I. The genus Placoneis. Nova Hedwigia 85(3-4): 331-352. http://dx.doi.org/10.1127/0029-5035/2007/0085-0331
  • Bruder, K. & Medlin, L.K. (2008a) Morphological and molecular investigations of naviculoid diatoms. II. Selected genera and families. Diatom Research 23(2): 283-329. http://dx.doi.org/10.1080/0269249x.2008.9705759
  • Bruder, K. & Medlin, L.K. (2008b) Morphological and molecular investigations of naviculoid diatoms. III. Hippodonta and Navicula s.s. Diatom Research 23(2): 331-347. http://dx.doi.org/10.1080/0269249x.2008.9705760
  • Bruder, K., Sato, S. & Medlin L.K. (2008) Morphological and molecular investigations of naviculoid diatoms IV. Pinnularia vs. Caloneis. Diatom 24: 8-24.
  • Cleve, P.T. & Grunow, A. (1880) Beitrage zur Kenntniss der Arctischen Diatomeen. Kongliga Svenska-Vetenskaps Akademiens Handlingar 17(2): 1-121.
  • Cleve, P.T. & Moller, J.D. (1882) Diatoms. Part VI, Esatas Edquists Boktryckeri, Upsala, 48 pp. [pp. 277-324]
  • Cox, E.J. (1987) Placoneis Mereschkowsky: the re-evaluation of a diatom genus originally characterized by its chloroplast type. Diatom Research 2: 145-157. http://dx.doi.org/10.1080/0269249x.1987.9704994
  • Cox, E.J. (2004) Pore occlusion in raphid diatoms - a reassessment of their structure and terminology, with particular reference to members of the Cymbellales. Diatom 20: 33-46.
  • Cox, E.J. (2012) Ontogeny, homology, and terminology - wall morphogenesis as an aid to character recognition and character state definition for pennate diatom systematics. J. Phycol. 48: 1-31. http://dx.doi.org/10.1111/j.1529-8817.2011.01081.x
  • Ehrenberg, C.G. (1837) Uber ein aus fossilen Infusorien bestehendes, 1832 zu Brod verbacknes Bergmehl von der Grenzen Lapplands in Schweden Bericht uber die zur Bekanntmachung geeigneten. Verhandlungen der Koniglich-Preussischen Akademie der Wissenschaften zu Berlin 1837: 43-45.
  • Gelman, A. & Rubin, D.B. (1992) Inference from iterative simulation using multiple sequences. Statistical Science 7: 457-511.
  • Guillard, R.R.L., Carpenter, E.J. & Reimann, B.E.F. (1974) Skeletonema menzelii sp. nov., a new diatom from the western Atlantic Ocean. Phycologia 13(2): 131-138. http://dx.doi.org/10.2216/i0031-8884-13-2-131.1
  • Guillard, R.R.L. & Lorenzen C.J. (1972) Yellow-green algae with chlorophyllide c. Journal of Phycology 8: 10-14. http://dx.doi.org/10.1111/j.0022-3646.1972.00010.x
  • Gusev, E.S. & Kulikovskiy, M.S. (2013) A new species of the genus Mallomonas (Chrysophyceae: Synurales), Mallomonas kuzminii sp. nov., from lake Frolikha (Russia, Baikal region). Phytotaxa 155(1): 66-70. http://dx.doi.org/10.11646/phytotaxa.155.1.6
  • Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
  • Katoh, K. & Toh, H. (2010). Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics 26: 1899-1900. http://dx.doi.org/10.1093/bioinformatics/btq224
  • Kermarrec, L., Ector, L., Bouchez, A., Rimet, F., Hoffmann, L. (2011) A preliminary phylogenetic analysis of the Cymbellales based on 18S rDNA gene sequencing. Diatom Research 26(3): 305-315. http://dx.doi.org/10.1080/0269249x.2011.633255
  • Kociolek, J.P., Kulikovskiy, M. & Solak, C.N. (2013) The diatom genus Gomphoneis Cleve (Bacillariophyceae) from Lake Baikal, Russia. Phytotaxa 154: 1-37. http://dx.doi.org/10.11646/phytotaxa.154.1.1
  • Kociolek, J.P. & Stoermer, E.F. (1998) A preliminary investigation of the phylogenetic relationships of the freshwater, apical pore fieldbearing cymbelloid and gomphonemoid diatoms (Bacillariophyceae). Journal of Phycology 24: 377-385. http://dx.doi.org/10.1111/j.1529-8817.1988.tb04480.x
  • Kociolek, J.P., Stepanek, J.G., Lowe, R.L., Johansen, J.R. & Sherwood A.R. (2013) Molecular data show the enigmatic cave-dwelling diatom Diprora (Bacillariophyceae) to be a raphid diatom. European Journal of Phycology 48(4): 474-484. http://dx.doi.org/10.1080/09670262.2013.860239
  • Kozhov, M.M. (1950) Fresh waters of East Siberia. Irkutskoe oblastnoye izdatelstvo, Irkutsk, 367 pp.
  • Krammer, K. & Lange-Bertalot, H. (1986) Bacillariophyceae 1. Teil: Naviculaceae. Suswasserflora von Mitteleuropa: 1-876.
  • Krammer, K. (1982) Valve morphology in the genus Cymbella C.A. Agardh. Micromorphology of Diatom Valves XI: 1-299.
  • Krammer, K. (1999) Validierung von Cymbopleura nov. gen. Iconographia Diatomologica 6: 292.
  • Krammer, K. (2003) Cymbopleura, Delicata, Navicymbula, Gomphocymbellopsis, Afrocymbella. Diatoms of Europe 4: 1-530.
  • Kulikovskiy, M.S. & Kociolek, J.P. (2014) The diatom genus Gomphonema Ehrenberg in Lake Baikal. I. Morphology and taxonomic history of two endemic species. Nova Hedwigia. Beiheft 143: 507-518. http://dx.doi.org/10.1127/1438-9134/2014/027
  • Kulikovskiy, M.S., Lange-Bertalot, H., Khursevich, G.K. & Kuznetsova, I.V. (2012c) New diatom species of the genus Eolimna (Bacillariophyceae) from Lake Baikal. News of the taxonomy of lower plants 46: 46-51.
  • Kulikovskiy, M.S., Lange-Bertalot, H., Metzeltin, D. & Witkowski, A. (2012a) Lake Baikal: hotspot of endemic diatoms I. Iconographia Diatomologica,V. 23, A.R.G. Gantner Verlag K.G., pp. 7-608.
  • Kulikovskiy, M., Lange-Bertalot, H. & Witkowski, A. (2013) Gliwiczia gen. nov., a new achananthoid diatom genus with description of four species new for science. Phytotaxa 109(1): 1-16. http://dx.doi.org/10.11646/phytotaxa.109.1.1
  • Kulikovskiy, M.S., Lange-Bertalot, H., Witkowski, A. & Khursevich, G.K. (2011) Achnanthidium sibiricum (Bacillariophyta), a new species from bottom sediments in Lake Baikal. Algological Studies 136/137: 77-87. http://dx.doi.org/10.1127/1864-1318/2011/0136-0077
  • Kulikovskiy, M.S., Witkowski, A. & Khursevich, G.K. (2012b) Encyonema horstii sp. nov., a species of unusual valve outline from Pleistocene deposits of Lake Baikal. Nova Hedwigia 141: 365-374.
  • Kutzing, F.T. (1844) Die kieselschaligen Bacillarien oder Diatomeen. Nordhausen, 152 pp.
  • Kuzmina, A.E., Ignatova, N.V. & Mizandronzev, I.B. (2004) Species composition, ecological and geographical characteristics of the diatoms from Lake Frolikha. Proceedings of the international symposium "Living cells of the diatoms" (Irkutsk) 1: 55.
  • Lange-Bertalot, H. (2001) Navicula sensu stricto. 10 genera separated from Navicula sensu lato, Frustulia. Diatom of Europe 2: 1-526.
  • Lange-Bertalot, H. & Metzeltin, D. (1996) Indicators of oligotrophy - 800 taxa representative of three ecologically distinct lake types, Carbonate buffered - Oligodystrophic - Weakly buffered soft water. Iconographia Diatomologica 2: 1-390.
  • Mann, D.G. (1981) Sieves and flaps: siliceous minutiae in the pores of raphid diatoms. Proceedings of the 6th Diatom Symposium: 279- 300.
  • Medlin, L.K. & Kaczmarska, I. (2004) Evolution of the diatoms: V. morphological and cytological support for the major clades and a taxonomic revision. Phycologia 43: 245-270. http://dx.doi.org/10.2216/i0031-8884-43-3-245.1
  • Mereschkowsky, C. (1903) Uber Placoneis, ein neues Diatomeen-Genus. Beihefte zum Botanischen Centralblatt 15: 1-30.
  • Novais, M.H., Wetzel, C.E., Van de Vijver, B., Morais, M.M., Hoffmann, L. & Ector L. (2013) New species and combinations in the genus Geissleria (Bacilllariophyceae). Cryptogamie, Algologie 34(2): 117-148. http://dx.doi.org/10.7872/crya.v34.iss2.2013.117
  • Posada, D. (2006) ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online, Nucleic Acids Research 34: W700-W703 http://dx.doi.org/10.1093/nar/gkl042
  • Rimet, F., Kermarrec, L., Bouchez, A., Hoffmann, L., Ector, L. & Medlin L.K. (2011) Molecular phylogeny of the family Bacillariaceae based on 18S rDNA sequences: focus on freshwater Nitzschia of the section Lanceolatae. Diatom Reserch 26(3): 273-291. http://dx.doi.org/10.1080/0269249x.2011.597988
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572- 1574. http://dx.doi.org/10.1093/bioinformatics/btg180
  • Round, F.E., Crawford, R.M. & Mann, D.G. (1990) The Diatoms. Biology & Morphology of the Genera. Cambridge University Press, Cambridge, 747 pp.
  • Schmidt, A. (1874-1959) Atlas der Diatomaceen-kunde. Parts 1-120, Pls. 1-460. R. Reisland, Leipzig.
  • Skabitschevsky, A.P. (1953) Phytoplankton and diatoms of Lake Frolikha (Transbaikalia). Proceedings of the Irkutsk State University. Biological Series 1: 145-152.
  • Sorhannus, U. (2004). Diatom phylogenetics inferred based on direct optimization of nuclear-encoded SSU rRNA sequences. Cladistics 20: 487-497. http://dx.doi.org/10.1111/j.1096-0031.2004.00034.x
  • Stepanek, J.G. & Kociolek, J.P. (2014) Molecular phylogeny of Amphora sensu lato (Bacillariophyta):An investigation into the monophyly and classification of the amphoroid diatoms. Protist 165: 177-195. http://dx.doi.org/10.1016/j.protis.2014.02.002
  • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology & Evolution 28: 2731- 2739. http://dx.doi.org/10.1093/molbev/msr121
  • Timoshkin, O.A. (1999) Biology of Lake Baikal: "White spots" and progress in research. Berliner Geowissenschaftliche Abhandlungen Reihe E Palaeobiologie 30: 333-348.
  • Zgrundo, A., Lemke, P., Pniewski, F., Cox, E.J. & Latala A. (2013) Morphological and molecular phylogenetic studies on Fistulifera saprophila. Diatom Research 28(4): 431-443. http://dx.doi.org/10.1080/0269249x.2013.833136
  • Zimmermann, J., Jahn, R. & Gemeinholzer, B. (2011) Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols. Organisms Diversity & Evolution 11: 173-192. http://dx.doi.org/10.1007/s13127-011-0050-6