Published June 18, 2014
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Nodularia (Cyanobacteria, Nostocaceae): a phylogenetically uniform genus with variable phenotypes
Authors/Creators
- 1. Biology Centre of AS CR, v.v.i., Institute of Hydrobiology, Na Sádkách 7, 370 05, České Budějovice, Czech Republic. & Institute of Botany AS CR v.v.i., Centre for Phycology, Dukelská 135, 379 82, Třeboň, Czech Republic.
- 2. Biology Centre of AS CR, v.v.i., Institute of Hydrobiology, Na Sádkách 7, 370 05, České Budějovice, Czech Republic. & Institute of Botany AS CR v.v.i., Centre for Phycology, Dukelská 135, 379 82, Třeboň, Czech Republic. & University of South Bohemia, Faculty of Science, Department of Botany, Branišovská 31, 370 05, České Budějovice, Czech Republic.
- 3. Biology Centre of AS CR, v.v.i., Institute of Soil Biology, Na Sádkách 7, 370 05, České Budějovice, Czech Republic.
- 4. Biology Centre of AS CR, v.v.i., Institute of Hydrobiology, Na Sádkách 7, 370 05, České Budějovice, Czech Republic.
- 5. Institute of Microbiology AS CR, v.v.i., Novohradská 237, 379 81, Třeboň, Czech Republic.
Description
Řeháková, Klára, Mareš, Jan, Lukešová, Alena, Zapomělová, Eliška, Bernardová, Kateřina, Hrouzek, Pavel (2014): Nodularia (Cyanobacteria, Nostocaceae): a phylogenetically uniform genus with variable phenotypes. Phytotaxa 172 (3): 235-246, DOI: 10.11646/phytotaxa.172.3.4, URL: http://dx.doi.org/10.11646/phytotaxa.172.3.4
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- urn:lsid:plazi.org:pub:FFDBFF8F9822FFA74A58FFEEFF9EC17A
References
- Allen, M.M. (1968) Simple conditions for growth of unicellular blue-green algae on plates. Journal of Phycology 4: 1-4. http://dx.doi.org/10.1111/j.1529-8817.1968.tb04667.x
- Beattie, K.A., Kaya, K. & Codd, G.A. (2000) The cyanobacterium Nodularia in PCC 7804, of freshwater origin, produces L-Har(2) nodularin. Phytochemistry 54: 57-61. http://dx.doi.org/10.1016/S0031-9422(00)00045-5
- Bornet, E. & Flahault, C. (1886) Revision des Nostocacees heterocystees contenues dans les principaux herbiers de France (quatrieme et dernier fragment). Annales des Sciences Naturelles, Botanique, Septieme Serie 7: 177-262.
- Carmichael, W.W., Eschedor, J.T., Patterson, G.M. & Moore, R.E. (1988) Toxicity and partial structure of a hepatotoxic peptide produced by the cyanobacterium Nodularia spumigena Mertens emend. L575 from New Zealand. Applied and Environmental Microbiology 54: 2257-2263. http://dx.doi.org/10.1016/0041-0101(89)90255-9
- Coleman, M.L., Sullivan, M.B., Martiny, A.C., Steglich C., Barry, K., DeLong, E.F. & Chisholm, S.W. (2006) Genomic Islands and the Ecology and Evolution of Prochlorococcus. Science 311: 1768-1770. http://dx.doi.org/10.1126/science.1122050
- de Clerk, O., Guiry, M.D., Leliaert, F., Samyn, Y. & Verbruggen, H. (2013) Algal taxonomy: a road to nowhere? Journal of Phycology 49: 215-225. http://dx.doi.org/10.1111/jpy.12020
- Flores, E. (2012) Restricted cellular differentiation in cyanobacterial filaments. Proceedings of the National Academy of Sciences of the United States of America 109: 15080-15081. http://dx.doi.org/10.1073/pnas.1213507109
- Goertzen, L.R. & Theriot, E.C. (2003) Effect of taxon sampling, character weighting, and combined data on the interpretation of relationships among the heterokont algae. Journal of Phycology 39: 423-439. http://dx.doi.org/10.1046/j.1529-8817.2003.01238.x
- Gugger, M. & Hoffmann, L. (2004) Polyphyly of true branching cyanobacteria (Stigonematales). International Journal of Systematic and Evolutionary Microbiology 54: 349-357. http://dx.doi.org/10.1099/ijs.0.02744-0
- Hasler, P., Dvorak, P., Ondrej, V., Kitner, M., Hlouskova, P. & Poulickova, A. (2011) The importance of polyphasic approach in the comparative study on Nodularia MERTENS ex BORNET et FLAHAULT (Nostocales, Cyanobacteria). Preslia 83: 167-182.
- Hindak, F., Smarda, J. & Komarek, J. (2003) Nodularia moravica spec. nova, a new benthic freshwater nostocalean species (Cyanophyta/ Cyanobacteria/Cyanoprokaryota). Algological Studies 109: 241-243. http://dx.doi.org/10.1127/1864-1318/2003/0109-0241
- Hrouzek, P., Tomek, P., Lukesova, A., Urban J., Voloshko, L., Pushparaj, B., Lukavsky, J., Stys, D. & Kopecky, J. (2011) Cytotoxicity and secondary metabolites production in terrestrial Nostoc strains, originating from different climatic/geographic regions and habitats: Is their cytotoxicity environmentally dependent? Environmental Toxicology 26: 345-358. http://dx.doi.org/10.1002/tox.20561
- Iteman, I., Rippka, R., Tandeau de Marsac, N. & Herdman, M. (2002) rDNA analyses of planktonic heterocystous cyanobacteria, including members of the genera Anabaenopsis and Cyanospira. Microbiology 148: 481-496.
- Jodlowska, S. & Latala, A. (2010) Photoacclimation strategies in the toxic cyanobacterium Nodularia spumigena (Nostocales, Cyanobacteria). Phycologia 49: 203-211. http://dx.doi.org/10.2216/PH08-14.1
- Johansen, J.R. & Casamatta, D.A. (2005) Recognizing cyanobacterial diversity through adoption of a new species paradigm. Algological Studies 117: 71-93. http://dx.doi.org/10.1127/1864-1318/2005/0117-0071
- Kaasalainen, U., Fewer, D.P., Jokela, J., Wahlsten, M., Sivonen, K. & Rikkinen, J. (2011) Cyanobacteria produce a high variety of hepatotoxic peptides in lichen symbiosis. Proceedings of the National Academy of Sciences of the United States of America 109: 5886-5891. http://dx.doi.org/10.1073/pnas.1200279109
- Katoh, K., Asimenos, G. & Toh, H. (2009) Multiple alignment of DNA sequences with MAFFT. In: Posada, D. (ed.) Bioinformatics for DNA Sequence Analysis. Humana Press, Totowa, pp. 39-64. http://dx.doi.org/10.1007/978-1-59745-251-9_3
- Komarek, J. (2010) Recent changes (2008) in cyanobacterial taxonomy based on a combination of molecular background with phenotype and ecological consequences (genus and species concept). Hydrobiologia. 639: 245-259. http://dx.doi.org/10.1007/s10750-009-0031-3
- Komarek, J. (2013) Cyanoprokaryota -3. Teil/ 3rd Part: Heterocytous genera. In: Budel, B., Gartner, G., Krienitz, L. & Schagerl, M. (eds.) Susswasserflora von Mitteleuropa 19/3. Elsevier/Spektrum, Heidelberg, 1130 pp.
- Komarek, J. & Mares, J. (2012) An update to modern taxonomy (2011) of freshwater planktic heterocytous cyanobacteria. Hydrobiologia 698: 327-351. http://dx.doi.org/10.1007/s10750-012-1027-y
- Komarek, J., Hubel, M., Hubel, H. & Smarda, J. (1993) The Nodularia studies. 2. Taxonomy. Algological Studies 68: 1-25.
- Koskenniemi, L., Lyra, C., Rajaniemi-Wacklin, P., Jokela, J., Sivonen, K. (2007) Quantitative real-time PCR detection of toxic Nodularia cyanobacteria in the Baltic Sea. Applied and Environmental Microbiology 73: 2173-2179. http://dx.doi.org/10.1128/aem.02746-06
- Laamanen, M.J., Gugger, M.F., Lehtimaki, J.M., Haukka, K. & Sivonen K. (2001) Diversity of toxic and nontoxic Nodularia isolates (Cyanobacteria) and filaments from the Baltic Sea. Applied and Environmental Microbiology 67: 4638-4647. http://dx.doi.org/10.1128/AEM.67.10.4638-4647.2001
- Lehtimaki, J., Lyra, C., Suomalainen, S., Sundman, P., Rouhiainen, L., Paulin, L., Salkinoja-Salonen, M. & Sivonen, K. (2000) Characterization of Nodularia strains, cyanobacteria from brackish waters, by genotypic and phenotypic methods. International Journal of Systematic and Evolutionary Microbiology 50: 1043-1053. http://dx.doi.org/10.1099/00207713-50-3-1043
- Lopes, V.R. & Vasconcelos, V. M. (2011) Planktonic and benthic cyanobacteria of European brackish waters: a perspective on estuaries and brackish seas. European Journal of Phycology 46: 292-304. http://dx.doi.org/10.1080/09670262.2011.602429
- Lyra, C., Laamanen, M., Lehtimaki, J.M., Surakka, A. & Sivonen, K. (2005) Benthic cyanobacteria of the genus Nodularia are non-toxic, without gas vacuoles, able to glide and genetically more diverse than planktonic Nodularia. International Journal of Systematic and Evolutionary Microbiology 55: 555-568. http://dx.doi.org/10.1099/ijs.0.63288-0
- McGregor, G.B., Stewart, I., Sendall, B.C., Sadler, R., Reardon, K., Carter, S., Wruck, D. & Wickramasinghe, W. (2012) First report of a toxic Nodularia spumigena (Nostocales/Cyanobacteria) bloom in sub-tropical Australia. I. Phycological and public health investigations. International Journal of Environmental Research and Public Health 9: 2396-2411. http://dx.doi.org/10.3390/ijerph9072396
- McNeill, J., Barrie, F.R., Buck, W.R., Demoulin, V., Greuter, W., Hawksworth, D.L., Herendeen, P.S., Knapp, S., Marhold, K., Prado, J., Prud'homme van Reine, W.F., Smith, G.F., Wiersema, J., Turland, N.J. (2012) International Code of Nomenclature for algae, fungi, and plants (Melbourne Code). Regnum Vegetabile 154: 1-208.
- Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, pp. 1-8. http://dx.doi.org/10.1109/GCE.2010.5676129
- Mishler, B.D. & Theriot, E.C. (2000) The phylogenetic species concept (sensu Mishler and Theriot): monophyly, apomorphy and phylogenetic species concepts. In: Wheeler, Q.D. & Meier, R. (eds.) Species Concepts and Phylogenetic Theory, A Debate. Columbia University Press, New York, pp. 44-54.
- Moffitt, M.C., Blackburn, S.I. & Neilan, B.A. (2001) rRNA sequences reflect the ecophysiology and define the toxic cyanobacteria of the genus Nodularia. International Journal of Systematic and Evolutionary Microbiology 51: 505-512.
- Nubel, U., Garcia-Pichel, F. & Muyzer, G. (1997) PCR primers to amplify 16S rRNA genes from cyanobacteria.Applied and Environmental Microbiology 63: 3327-3332.
- Otsuka, S., Suda, S., Li, R., Watanabe, M., Oyaizu, H., Matsumoto, S. & Watanabe, M. M. (1998) 16S rDNA sequences and phylogenetic analyses of Microcystis strains with and without phycoerythrin. FEMS Microbiology Letters 164: 119-124. http://dx.doi.org/10.1016/S0378-1097(98)00202-X
- Palinska, K. A., W. Liesack, E. Rhiel, & Krumbein, W. E. (1996) Phenotype variability of identical alleles: the need for a combined approach in cyanobacterial taxonomy demonstrated on Merismopedia -like isolates. Archives of Microbiology 166: 224-233. http://dx.doi.org/10.1007/s002030050378
- Papaefthimiou, D., Hrouzek, P., Mugnai, M.A., Lukesova, A., Turicchia, S., Rasmussen, U. & Ventura, S. (2008) Differential patterns of evolution and distribution of the symbiotic behaviour in nostocacean cyanobacteria. International Journal of Systematic and Evolutionary Microbiology. 58: 553-564. http://dx.doi.org/10.1099/ijs.0.65312-0
- Perkerson, R.B.III., Johansen, J.R., Kovacik, L., Brand, J., Kastovsky, J. & Casamatta, D.A. (2011) A unique Pseudanabaenalean (Cyanobacteria) genus Nodosilinea gen. nov. based on morphological and molecular data. Journal of Phycology 47: 1397-1412. http://dx.doi.org/10.1111/j.1529-8817.2011.01077.x
- Rantala, A., Fewer, D.P., Hisbergues, M., Rouhiainen, L., Vaitomaa, J., Borner, T. & Sivonen, K. (2004) Phylogenetic evidence for the early evolution of microcystin synthesis. Proceedings of the National Academy of Sciences of the United States of America 101: 568-573. http://dx.doi.org/10.1073/pnas.0304489101
- Rehakova, K., Johansen, J.R., Casamatta, D.A., Xuesong, L. & Vincent, J. (2007) Polyphasic characterization of heterocytous cyanobacteria: Three species new to science including Mojavia pulchra gen. et sp. nov. Phycologia. 46: 481-502.
- Risser, D.D., Wong, F.C.Y. & Meeks, J.C. (2012) Biased inheritance of the protein PatN frees vegetative cells to initiate patterned heterocyst differentiation. Proceedings of the National Academy of Sciences of the United States of America 109: 15342-15347. http://dx.doi.org/10.1073/pnas.1207530109
- Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574. http://dx.doi.org/10.1093/bioinformatics/btg180
- Rudi, K., Skulberg, O.M. & Jakobsen, K.S. (1998) Evolution of Cyanobacteria by exchange of genetic material among phyletically related strains. Journal of Bacteriology 180: 3453-3461.
- Sellner, K.G. (1997) Physiology, ecology, and toxic properties of marine cyanobacteria blooms. Limnology and Oceanography 42: 1089-1104. http://dx.doi.org/10.4319/lo.1997.42.5_part_2.1089
- Sejnohova, L. & Marsalek, B. (2012) Microcystis. In: Whitton, B.A. (ed.) Ecology of Cyanobacteria II: Their Diversity in Space and Time. Springer Verlag GmbH, Heidelberg, pp. 195-227.
- Sivonen, K. & Jones, G. (1999) Cyanobacteria toxins. In: Chorus, I. & Bartrum, J. (eds.) Toxic Cyanobacteria in water: A Guide to their Public Health Consequences, Monitoring and Management. E&P Spon, London, pp. 41-111.
- Stackebrandt, E. & Goebel, B.M. (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. International Journal of Systematic Bacteriology 44: 846-849. http://dx.doi.org/10.1099/00207713-44-4-846
- Stamatakis, A. (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. http://dx.doi.org/10.1093/bioinformatics/btl446
- Swofford, D.L. (2003) PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland.
- Taton, A., Grubisic, S., Brambilla, E., De Wit, R. & Wilmotte, A. (2003) Cyanobacterial diversity in natural and artificial microbial mats of Lake Fryxell (McMurdo dry valleys, Antarctica): a morphological and molecular approach. Applied and Environmental Microbiology 69: 5157-5169. http://dx.doi.org/10.1128/aem.69.9.5157-5169.2003
- Tautz, D., Arctander, P., Minelli, A., Thomas, R. H. & Vogler, A. P. (2003) A plea for DNA taxonomy. Trends in Ecology & Evolution 18: 70-74. http://dx.doi.org/10.1016/S0169-5347(02)00041-1
- Voss, B., Bolhuis, H., Fewer, D.P., Kopf, M., Moke, F, Haas, F., El-Shehawy, R., Hayes, P., Bergman, B., Sivonen, K., Dittmann, E., Scanlan, D.J., Hagemann, M., Stal, L.J. & Hess, W.R. (2013) Insights into the Physiology and Ecology of the Brackish-Water- Adapted Cyanobacterium Nodularia spumigena CCY9414 Based on a Genome-Transcriptome Analysis. PLoS ONE 8(3): e60224. http://dx.doi.org/10.1371/journal.pone.0060224
- Wilmotte, A., Van der Auwera, C. & de Wachter, R. (1993) Structure of the 16S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF (Mastigocladus laminosus HTF) strain PCC7518 and phylogenetic analysis. FEBS Letters 317: 96-100. http://dx.doi.org/10.1016/0014-5793(93)81499-P
- Zapomelova, E., Hilsem, D., Rehakova, K., Hrouzek, P., Jezberova, J., Komarkova, J., Korelusova, J. & Znachor, P. (2008a) Experimental comparison of phenotypical plasticity and growth demands of two strains from the Anabaena circinalis/A.crassa complex (cyanobacteria). Journal of Plankton Research 30: 1257-1269. http://dx.doi.org/10.1093/plankt/fbn081
- Zapomelova, E., Hrouzek, P., Rehakova, K., Sabacka, M., Stibal, M., Caisova, L., Komarkova, J. & Lukesova, A. (2008b) Morphological variability in selected heterocytous cyanobacterial strains as a response to varied temperature, light intensity and media treatment. Folia Microbiologica 53: 333-341. http://dx.doi.org/10.1007/s12223-008-0052-8
- Zapomelova, E., Jezberova, J., Hrouzek P., Hisem D., Rehakova, K. & Komarkova, J. (2009) Polyphasic characterization of the threes strains of Anabaena reniformis and Aphanizomenon aphanizomenoides (Cyanobacteria) and their reclassification to Sphearospermum gen. nov. (inc. Anabaena kisseleviana). Journal of Phycology 45: 1363-1373. http://dx.doi.org/10.1111/j.1529-8817.2010.00830.x
- Zapomelova, E., Hrouzek, P., Rezanka, T., Jezberova, J., Rehakova, K., Hisem, D. & Komarkova, J. (2011) Polyphasic characterization of Dolichospermum spp. and Sphaerospermopsis spp. (Nostocales, cyanobacteria): Morphology, 16S rRNA Gene sequences and fatty acid and secondary metabolite profiles. Journal of Phycology 47: 1152-1163. http://dx.doi.org/10.1111/j.1529-8817.2011.01034.x